Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H17
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0682 + 24251861-24251911,24252036-24252086,24255244-242553...    56   1e-08
06_01_0311 - 2243117-2243185,2243321-2243400,2243554-2243620,224...    54   9e-08
10_01_0018 + 222570-222675,223317-223495,223496-223591                 29   2.1  
01_06_1753 - 39664219-39665445                                         29   2.1  
11_01_0609 - 4865229-4865510,4865981-4866144,4866219-4866320,486...    27   6.5  
07_03_1768 - 29363893-29364010,29364568-29365541                       27   8.6  

>01_05_0682 +
           24251861-24251911,24252036-24252086,24255244-24255310,
           24255405-24255484,24255631-24255696
          Length = 104

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +3

Query: 126 ATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEEHATA--V 299
           ATGLER EL A   G +  F+M       GT+E+P ++ S ++ RIVGC   E      V
Sbjct: 4   ATGLEREELAAELKG-EKRFDMDPPVGPFGTKEAPAVIESYYNKRIVGCPGGEGEDEHDV 62

Query: 300 TWLWLHKDHPRRCE-CGHWYKL 362
            W WL KD P  C  C  ++ L
Sbjct: 63  VWFWLKKDEPHECPVCSQYFVL 84


>06_01_0311 -
           2243117-2243185,2243321-2243400,2243554-2243620,
           2245176-2245226,2245317-2245402,2245501-2245612
          Length = 154

 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +3

Query: 111 DPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEEHA 290
           D +  ATGLER E+ A   G    F+M       GT+E+P ++ S ++ RIVGC   E  
Sbjct: 48  DVMPIATGLEREEIAAELQGKKR-FDMDAPVGPFGTKEAPAVIQSYYNKRIVGCPGGEGE 106

Query: 291 TA--VTWLWLHKDHPRRCE-CGHWYKL 362
               V W WL K  P  C  C  ++ L
Sbjct: 107 DEHDVVWFWLEKGKPHECPVCTQYFSL 133


>10_01_0018 + 222570-222675,223317-223495,223496-223591
          Length = 126

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 241 GTRVGLSRVPAAFF--STFMLKGSSLPACIAISSLLSKP 131
           G  VG  RV A+ F  +T  L G++ P CI   SLL  P
Sbjct: 51  GMAVGRLRVKASLFGSTTATLAGAAFPWCIVAESLLLPP 89


>01_06_1753 - 39664219-39665445
          Length = 408

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -2

Query: 233 GGAFTSSSSLLQHFHVEGIIIASLHSHKFPSFQASSVFQGVRHHFISITPSRNG 72
           GGA    ++  QH  +EG+       + +   QA +V  G +HH+   T +  G
Sbjct: 217 GGAVKQHATYKQHQAIEGVNGCGAGGYNYNRHQAVAVAGGGQHHYGGATAAAYG 270


>11_01_0609 -
           4865229-4865510,4865981-4866144,4866219-4866320,
           4866674-4867217
          Length = 363

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 326 VVLM*PEPSDSCSVFFTYASDNTRIKTRRHEGGAFTSS 213
           V +  P   D  S F  + S N  IKT   EGG  T++
Sbjct: 74  VTVFEPSGIDKISTFSAHPSKNVIIKTESDEGGMVTAA 111


>07_03_1768 - 29363893-29364010,29364568-29365541
          Length = 363

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 164 LHSHKFPSFQASSVFQGVRHHFISIT 87
           LH H+ P+   +++    RH FIS T
Sbjct: 23  LHHHQLPAAADNAILHNTRHPFISTT 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,309,701
Number of Sequences: 37544
Number of extensions: 338088
Number of successful extensions: 777
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)