Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H17
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25815| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   7e-13
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            31   0.71 
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    30   0.94 
SB_20260| Best HMM Match : fn3 (HMM E-Value=0)                         30   1.2  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         30   1.2  
SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)                 29   2.2  
SB_28687| Best HMM Match : SWIM (HMM E-Value=0.16)                     28   5.0  
SB_35667| Best HMM Match : DUF1514 (HMM E-Value=1)                     27   6.6  
SB_35280| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_40902| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)                   27   8.8  

>SB_25815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 25/50 (50%), Positives = 40/50 (80%)
 Frame = +3

Query: 213 GTRESPTLVPSCFDARIVGCICEEHATAVTWLWLHKDHPRRCECGHWYKL 362
           GT+++PT+VPS ++ RIVGC+CEE AT + W+ L    P+RC+CG++++L
Sbjct: 7   GTKDNPTIVPSGYEERIVGCVCEEDATMIRWMLLKAGPPQRCDCGNYFQL 56


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -2

Query: 305 PSDSCSVFFTYASDNTRIKTRRHEGGAFTSSSSLLQHFHVEG-IIIASLHSHKFPSFQAS 129
           PS S  +   + S ++ I    H     +SSSS++ H      III  +H H  PS  +S
Sbjct: 200 PSSSSIIIHHHPSSSSSIIIIIHHHHHPSSSSSIIIHHPSSSIIIIIIIHHHHHPS--SS 257

Query: 128 SVFQGVRHH 102
           S+   + HH
Sbjct: 258 SIIIIIHHH 266


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +1

Query: 259  VLSDAYVKNTLQLSLGSGYIRTTLVAVNADTGTNWSRSSSYKYKEV*FTTSSDTSVINT 435
            V + A +   +Q   GSG     + AV+ D G+N   + S KY    F+  S T VI T
Sbjct: 2199 VFTPATLTVKVQEDTGSGTTVIKVSAVDGDVGSNADVTYSLKYSFSRFSIDSKTGVITT 2257


>SB_20260| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1428

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 78  ARRGYADKMMPDPLEHATGLERRELMAMQAGNDDPFNMKVLK 203
           ++RG   +M+PD +  A GL R +L A+  G D  +N+   K
Sbjct: 815 SQRGLVTRMLPDIITSACGLCRDQLTALDLG-DPQYNLTSFK 855


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = -3

Query: 364 TNLYQCPHSQRRGWSL--CNQSQVTAVACSSHMHPTIRASKQDGTRVGLSRV 215
           ++L  CPH    GW +  CN S    + CS+   P I     DG      RV
Sbjct: 756 SSLADCPHD---GWGVHSCNHSNDVVLFCSNTSGPDIEVRLSDGNSPAEGRV 804


>SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)
          Length = 1236

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +3

Query: 186  NMKVLKKAAGTRESPTLVPSCFDARIV----GCICEEHATAV 299
            N  + +K +GT  +PT  PSC D R++    GC+  +HA  V
Sbjct: 892  NPALPQKQSGTTGNPTPSPSCNDLRVIIHVEGCV-HQHALLV 932


>SB_28687| Best HMM Match : SWIM (HMM E-Value=0.16)
          Length = 408

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 150 VPFFPSQ*-RVPGGQASFYQHNPVSQWVVNTSKCIYFINL 34
           VPF P +   VP G    YQ    +++++N   C  F NL
Sbjct: 213 VPFVPCKFGNVPKGSVLSYQQKMSTEYIINDFTCTAFPNL 252


>SB_35667| Best HMM Match : DUF1514 (HMM E-Value=1)
          Length = 241

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 373 CFSTNLYQCPHSQRRGWSLCNQSQVTAVACSSHMHPT 263
           C  TN Y  P  Q+R   LCN+   T + C +  + T
Sbjct: 84  CGCTN-YNTPEMQKRNIPLCNRLNSTIIDCLNKAYDT 119


>SB_35280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 150 VPFFPSQ*-RVPGGQASFYQHNPVSQWVVNTSKCIYFINL 34
           VPF P +   VP G    YQ    +++++N   C  F NL
Sbjct: 29  VPFVPCKFGNVPKGSVLSYQQKISTEYIINDFTCTAFPNL 68


>SB_40902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 373 CFSTNLYQCPHSQRRGWSLCNQSQVTAVACSSHMHPTIRASKQD 242
           C  TN Y  P  Q+R  SLCN+     + C +  + T      D
Sbjct: 662 CGCTN-YNTPELQKRNISLCNRLNNAIIDCLNKAYDTFEDGSCD 704


>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1101

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 117 LEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPS 245
           LE       RE+ A+   +DD  N K+ K    ++   TL+PS
Sbjct: 177 LEKIPASVEREIQALVGKSDDNTNKKIAKMDGSSQIPDTLLPS 219


>SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)
          Length = 454

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 385 IYTNCFSTNLYQCPHSQRRGWSLCNQSQVTA-VACSSHMHPTI 260
           +Y  CFS  +Y  P      WS+   S V + V   S +H  I
Sbjct: 397 LYLICFSLAIYLRPRDPNYKWSVVRSSDVVSHVTADSILHDDI 439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,623,327
Number of Sequences: 59808
Number of extensions: 402974
Number of successful extensions: 957
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)