Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H17
(504 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR541753-1|CAG46553.1| 129|Homo sapiens COX5B protein. 101 1e-21
M59250-1|AAA52060.1| 129|Homo sapiens COX5B protein. 99 4e-21
M19961-1|AAA52061.1| 129|Homo sapiens COX5B protein. 99 4e-21
BT006742-1|AAP35388.1| 129|Homo sapiens cytochrome c oxidase su... 99 4e-21
BC006229-1|AAH06229.1| 129|Homo sapiens cytochrome c oxidase su... 99 4e-21
AC017099-1|AAY24279.1| 129|Homo sapiens unknown protein. 99 4e-21
CR541727-1|CAG46528.1| 129|Homo sapiens COX5B protein. 99 8e-21
BC126261-1|AAI26262.1| 593|Homo sapiens FLJ20273 protein protein. 29 9.2
BC034402-1|AAH34402.1| 497|Homo sapiens FLJ20273 protein protein. 29 9.2
AK000280-1|BAA91049.1| 524|Homo sapiens protein ( Homo sapiens ... 29 9.2
AF262323-1|AAM21973.1| 593|Homo sapiens RNA-binding protein pro... 29 9.2
>CR541753-1|CAG46553.1| 129|Homo sapiens COX5B protein.
Length = 129
Score = 101 bits (243), Expect = 1e-21
Identities = 50/91 (54%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 105 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 284
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS D RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISDKRIVGCICEE 95
Query: 285 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 374
T+V W WLHK +RC CG YKLV +Q
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLVPQQ 126
>M59250-1|AAA52060.1| 129|Homo sapiens COX5B protein.
Length = 129
Score = 99 bits (238), Expect = 4e-21
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 105 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 284
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 285 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 374
T+V W WLHK +RC CG YKLV +Q
Sbjct: 96 DNTSVVWFWLHKGQAQRCPRCGAHYKLVPQQ 126
>M19961-1|AAA52061.1| 129|Homo sapiens COX5B protein.
Length = 129
Score = 99 bits (238), Expect = 4e-21
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 105 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 284
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 285 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 374
T+V W WLHK +RC CG YKLV +Q
Sbjct: 96 DNTSVVWFWLHKGQAQRCPRCGAHYKLVPQQ 126
>BT006742-1|AAP35388.1| 129|Homo sapiens cytochrome c oxidase
subunit Vb protein.
Length = 129
Score = 99 bits (238), Expect = 4e-21
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 105 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 284
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 285 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 374
T+V W WLHK +RC CG YKLV +Q
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLVPQQ 126
>BC006229-1|AAH06229.1| 129|Homo sapiens cytochrome c oxidase
subunit Vb protein.
Length = 129
Score = 99 bits (238), Expect = 4e-21
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 105 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 284
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 285 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 374
T+V W WLHK +RC CG YKLV +Q
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLVPQQ 126
>AC017099-1|AAY24279.1| 129|Homo sapiens unknown protein.
Length = 129
Score = 99 bits (238), Expect = 4e-21
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 105 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 284
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 285 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 374
T+V W WLHK +RC CG YKLV +Q
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLVPQQ 126
>CR541727-1|CAG46528.1| 129|Homo sapiens COX5B protein.
Length = 129
Score = 99.1 bits (236), Expect = 8e-21
Identities = 49/91 (53%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = +3
Query: 105 MPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCICEE 284
+P E ATGLER ++A + G D P+N+ K A+GTRE P LVPS + RIVGCICEE
Sbjct: 37 VPTDEEQATGLEREIMLAAKKGLD-PYNVLAPKGASGTREDPNLVPSISNKRIVGCICEE 95
Query: 285 HATAVTWLWLHKDHPRRC-ECGHWYKLVEKQ 374
T+V W WLHK +RC CG YKLV Q
Sbjct: 96 DNTSVVWFWLHKGEAQRCPRCGAHYKLVPHQ 126
>BC126261-1|AAI26262.1| 593|Homo sapiens FLJ20273 protein protein.
Length = 593
Score = 29.1 bits (62), Expect = 9.2
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -1
Query: 423 GCITTGSKLNFFVFIRTASRPICTSVRIHSDEGGPYVTRAK*QL*RVLHICIRQYAHQNK 244
GC+ K+ + F+ SR +V ++ G + + ++ + QY+ K
Sbjct: 272 GCVERVKKIRDYAFVHFTSRE--DAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQK 329
Query: 243 TARGWGFHE-FQQPSSALSC 187
ARG G E QQPS SC
Sbjct: 330 AARGGGAAEAAQQPSYVYSC 349
>BC034402-1|AAH34402.1| 497|Homo sapiens FLJ20273 protein protein.
Length = 497
Score = 29.1 bits (62), Expect = 9.2
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -1
Query: 423 GCITTGSKLNFFVFIRTASRPICTSVRIHSDEGGPYVTRAK*QL*RVLHICIRQYAHQNK 244
GC+ K+ + F+ SR +V ++ G + + ++ + QY+ K
Sbjct: 272 GCVERVKKIRDYAFVHFTSRE--DAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQK 329
Query: 243 TARGWGFHE-FQQPSSALSC 187
ARG G E QQPS SC
Sbjct: 330 AARGGGAAEAAQQPSYVYSC 349
>AK000280-1|BAA91049.1| 524|Homo sapiens protein ( Homo sapiens
cDNA FLJ20273 fis, clone HEP01750. ).
Length = 524
Score = 29.1 bits (62), Expect = 9.2
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -1
Query: 423 GCITTGSKLNFFVFIRTASRPICTSVRIHSDEGGPYVTRAK*QL*RVLHICIRQYAHQNK 244
GC+ K+ + F+ SR +V ++ G + + ++ + QY+ K
Sbjct: 272 GCVERVKKIRDYAFVHFTSRE--DAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQK 329
Query: 243 TARGWGFHE-FQQPSSALSC 187
ARG G E QQPS SC
Sbjct: 330 AARGGGAAEAAQQPSYVYSC 349
>AF262323-1|AAM21973.1| 593|Homo sapiens RNA-binding protein
protein.
Length = 593
Score = 29.1 bits (62), Expect = 9.2
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -1
Query: 423 GCITTGSKLNFFVFIRTASRPICTSVRIHSDEGGPYVTRAK*QL*RVLHICIRQYAHQNK 244
GC+ K+ + F+ SR +V ++ G + + ++ + QY+ K
Sbjct: 272 GCVERVKKIRDYAFVHFTSRE--DAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQK 329
Query: 243 TARGWGFHE-FQQPSSALSC 187
ARG G E QQPS SC
Sbjct: 330 AARGGGAAEAAQQPSYVYSC 349
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,594,152
Number of Sequences: 237096
Number of extensions: 1897562
Number of successful extensions: 3504
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3495
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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