Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H17
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81070-9|CAB03002.1|  132|Caenorhabditis elegans Hypothetical pr...   100   5e-22
U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory recep...    29   2.5  
U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant respons...    29   2.5  
U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain (pr...    28   3.3  
Z83108-5|CAB05508.1|  645|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z83108-4|CAB05507.1|  645|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U68263-1|AAB16978.1|  115|Caenorhabditis elegans rab-like protein.     27   5.8  
U39996-4|AAA81090.2|  266|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>Z81070-9|CAB03002.1|  132|Caenorhabditis elegans Hypothetical
           protein F26E4.9 protein.
          Length = 132

 Score =  100 bits (240), Expect = 5e-22
 Identities = 45/88 (51%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
 Frame = +3

Query: 108 PDPLEHATGLERRELMAMQAGNDDPFNMKVLKKA-AGTRESPTLVPSCFDARIVGCICEE 284
           PDPLEHATG E++ L+A  AG DD +  KV  +A A T++ P LVPS +D RI+GC+CE+
Sbjct: 40  PDPLEHATGREKKMLLARLAG-DDRYEPKVYYRAEASTKQKPNLVPSHYDFRIIGCMCEQ 98

Query: 285 HATAVTWLWLHKDHPRRCECGHWYKLVE 368
            +  V ++ + K  P+RCECGHW+K V+
Sbjct: 99  DSGHVNFMTIRKGDPKRCECGHWFKGVD 126


>U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory receptor
           Odr-10 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +1

Query: 355 TNWSRSSSYKYKEV*FTTSSDTSVINTH*KCAQ-------PFVTIAYSVAIRHIYVK 504
           T W+  S + Y +  +T ++ T+V+N H    +        +V   Y   +RHIY+K
Sbjct: 144 TMWASVSYFLYPDTEYTEAAVTNVLNNHYNWIKKENVSYIAYVYYQYENGVRHIYLK 200


>U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant response
           abnormal protein10 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +1

Query: 355 TNWSRSSSYKYKEV*FTTSSDTSVINTH*KCAQ-------PFVTIAYSVAIRHIYVK 504
           T W+  S + Y +  +T ++ T+V+N H    +        +V   Y   +RHIY+K
Sbjct: 144 TMWASVSYFLYPDTEYTEAAVTNVLNNHYNWIKKENVSYIAYVYYQYENGVRHIYLK 200


>U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 7 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 93  ADKMMPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRE 224
           A ++ PD  E   GLE  + +  QAG  D + +  +K+ A  RE
Sbjct: 351 ATEVNPDHREAKEGLEHAKRLKTQAGKRDYYKILGVKRNASKRE 394


>Z83108-5|CAB05508.1|  645|Caenorhabditis elegans Hypothetical
           protein F44E5.5 protein.
          Length = 645

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 305 PSDSCSVFFTYASDNTRIKTRRHEG-GAFTSSSSLLQHFHVEGI 177
           P+ +C  F TYA +   +  + +EG  A T  +  L  F + GI
Sbjct: 422 PTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGI 465


>Z83108-4|CAB05507.1|  645|Caenorhabditis elegans Hypothetical
           protein F44E5.4 protein.
          Length = 645

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 305 PSDSCSVFFTYASDNTRIKTRRHEG-GAFTSSSSLLQHFHVEGI 177
           P+ +C  F TYA +   +  + +EG  A T  +  L  F + GI
Sbjct: 422 PTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGI 465


>U68263-1|AAB16978.1|  115|Caenorhabditis elegans rab-like protein.
          Length = 115

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 305 PSDSCSVFFTYASDNTRIKTRRHEGGAFTSSS 210
           PS SC +   YAS+  R   R HE    TS++
Sbjct: 17  PSSSCDIKSIYASEKVREAIRDHEQTIATSTA 48


>U39996-4|AAA81090.2|  266|Caenorhabditis elegans Hypothetical
           protein C56E6.2 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 305 PSDSCSVFFTYASDNTRIKTRRHEGGAFTSSS 210
           PS SC +   YAS+  R   R HE    TS++
Sbjct: 17  PSSSCDIKSIYASEKVREAIRDHEQTIATSTA 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,790,031
Number of Sequences: 27780
Number of extensions: 281009
Number of successful extensions: 627
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)