Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H17
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.34 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.34 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.5  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 295 AVACSSHMH---PTIRASKQDGTRVGLSRVPAAFFSTFML 185
           AVAC    H   P +RAS ++ T + L+ V   + +TF+L
Sbjct: 532 AVACLLFHHRDTPVVRASGRELTIILLAGVLVCYLNTFLL 571


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 295 AVACSSHMH---PTIRASKQDGTRVGLSRVPAAFFSTFML 185
           AVAC    H   P +RAS ++ T + L+ V   + +TF+L
Sbjct: 622 AVACLLFHHRDTPVVRASGRELTIILLAGVLVCYLNTFLL 661


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = -1

Query: 93  HNPVSQWVVNTSKCIYFIN 37
           ++ ++QWV   + C+Y+ +
Sbjct: 290 YDDINQWVYPLTGCLYYFS 308


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 150 LMAMQAGNDDPFNMKVLKK 206
           ++A + G D+ + +K+LKK
Sbjct: 1   MLAERKGTDELYAIKILKK 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,115
Number of Sequences: 438
Number of extensions: 3382
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)