Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H17
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80230.1 68414.m09389 cytochrome c oxidase family protein con...    48   4e-06
At3g15640.1 68416.m01983 cytochrome c oxidase family protein con...    47   6e-06
At1g52710.1 68414.m05954 cytochrome c oxidase-related similar to...    39   0.002
At2g43040.1 68415.m05341 calmodulin-binding protein similar to p...    28   3.1  
At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to a...    27   7.2  
At2g42040.1 68415.m05199 expressed protein                             27   9.5  

>At1g80230.1 68414.m09389 cytochrome c oxidase family protein
           contains Pfam domain, PF01215: Cytochrome c oxidase
           subunit Vb
          Length = 171

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
 Frame = +3

Query: 99  KMMPDPLEHATGLERRELMAMQAGNDDPFNMKVLKKAAGTRESPTLVPSCFDARIVGCIC 278
           K + D +  ATG E+ EL A   G     ++   +   GT+E+P +V S +D RIVGC  
Sbjct: 65  KRVEDVMPIATGHEKEELQAELEGRKLD-DIDFPEGPFGTKEAPAVVKSYYDMRIVGCPG 123

Query: 279 EEHATA--VTWLWLHKDHPRRCE-CGHWYKL 362
            E      V W WL K     C  C  ++KL
Sbjct: 124 GEGEDEHDVVWFWLEKGKSFECPVCTQYFKL 154


>At3g15640.1 68416.m01983 cytochrome c oxidase family protein
           contains Pfam domain, PF01215: Cytochrome c oxidase
           subunit Vb
          Length = 176

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
 Frame = +3

Query: 93  ADKMMPDPLEHATGLERRELMAMQAGN--DDPFNMKVLKKAAGTRESPTLVPSCFDARIV 266
           A K + D +  ATG E+ EL A   G   DD   +   +   GT+E+P +V S +D RIV
Sbjct: 64  ATKKVEDVMPIATGHEKEELEAELEGRRLDD---IDFPEGPFGTKEAPAIVKSYYDKRIV 120

Query: 267 GCICEEHATA--VTWLWLHKDHPRRCE-CGHWYKL 362
           GC   E      V W WL K     C  C  +++L
Sbjct: 121 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFEL 155


>At1g52710.1 68414.m05954 cytochrome c oxidase-related similar to
           SP|P00428 Cytochrome c oxidase polypeptide Vb (EC
           1.9.3.1) (VI) [Bovine] {Bos taurus}
          Length = 90

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 213 GTRESPTLVPSCFDARIVGCICEEHATA--VTWLWLHKDHPRRCE-CGHWYK 359
           GT+ESP +V S FD R +GC   E      V W WL K     C  C  +++
Sbjct: 24  GTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGKSFECPVCSQYFE 75


>At2g43040.1 68415.m05341 calmodulin-binding protein similar to
           pollen-specific calmodulin-binding protein MPCBP
           GI:10086260 from [Zea mays]; contains Pfam profile
           PF00515: TPR Domain
          Length = 704

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 211 AAFFSTFMLKGSSLPACIAISSLLSK 134
           AAF    +L GSS+P  +A+ +LLS+
Sbjct: 610 AAFLDGLLLDGSSVPCKVAVGALLSE 635


>At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to
            aldehyde oxidases from Arabidopsis thaliana: GI:3172023,
            GI:3172025, GI:3172044; identical to cDNA putative
            aldehyde oxidase (AO2) mRNA, partial cds GI:2792305
          Length = 1337

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 186  NMKVLKKAAGTRESPTLVPSCFDARIVGCICEEHATAVTWLWLHKDHPRRCECG 347
            N  +  KA+G  E P LV +         I E     ++W  +  DH  RC+ G
Sbjct: 1255 NRVLSSKASG--EPPLLVAASVHCATRSAIREARKQYLSWNCIDDDHRERCDLG 1306


>At2g42040.1 68415.m05199 expressed protein
          Length = 269

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
 Frame = -3

Query: 352 QCPHSQRRGWSLCNQSQVTAVACSSHM-HPTIRA-SKQDGTRVGLSRVPAAFFSTFMLKG 179
           +C     RGW  C Q+ V    C  H+    +R+ +K  G R G  +          +K 
Sbjct: 168 RCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRVRSMNKSGGGRGGEKKAVVVEVKKKRVKL 227

Query: 178 SSLPACIAISSLLSKPVACSRGSG 107
             + A  +ISSLL +       SG
Sbjct: 228 GMVKA-RSISSLLGQTSTSGGTSG 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,071,168
Number of Sequences: 28952
Number of extensions: 261003
Number of successful extensions: 617
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)