BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_H16 (469 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 61 9e-11 SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 35 0.005 SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 27 1.4 SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 26 3.3 SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 25 4.4 SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 4.4 SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 25 5.8 >SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4|Schizosaccharomyces pombe|chr 1|||Manual Length = 210 Score = 60.9 bits (141), Expect = 9e-11 Identities = 27/55 (49%), Positives = 39/55 (70%) Frame = +2 Query: 302 MMEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEG 466 + WLFG +P E LR +QR+L +A R+LDRER K++Q+E+ +I +IK AK G Sbjct: 3 LTSWLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAG 57 >SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharomyces pombe|chr 1|||Manual Length = 231 Score = 35.1 bits (77), Expect = 0.005 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +2 Query: 296 EVMMEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 463 + + + FG TP E RK Q + K R LDR+ ++ KK +K+LAK+ Sbjct: 2 QTVRSYFFGP--TPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQ 55 >SPBC4B4.04 |||translation initiation factor eIF2A |Schizosaccharomyces pombe|chr 2|||Manual Length = 576 Score = 27.1 bits (57), Expect = 1.4 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +2 Query: 353 KNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQ 469 K R+L K +R +D + ++ EK +KK+ EG+ Sbjct: 524 KKIRSLCKKLRAIDDLKSRLNNNEKLEATQVKKIESEGK 562 >SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizosaccharomyces pombe|chr 1|||Manual Length = 421 Score = 25.8 bits (54), Expect = 3.3 Identities = 13/61 (21%), Positives = 32/61 (52%) Frame = +2 Query: 281 LISIKEVMMEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAK 460 L S+K +++ + + ++ + L + A+ A RD++ R + E + +AD +K + Sbjct: 246 LSSLKYMLLSQIMLNSVSEVKSLLTGKHAIRYAGRDIEAMRAIAQAHENRSLADFEKALQ 305 Query: 461 E 463 + Sbjct: 306 D 306 >SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase Gpt1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1448 Score = 25.4 bits (53), Expect = 4.4 Identities = 14/52 (26%), Positives = 27/52 (51%) Frame = +2 Query: 278 HLISIKEVMMEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKV 433 HLI I + +WL+ DE L K + ++ L +E+ K+++ ++V Sbjct: 1362 HLIPIYSLPQDWLWCETWCSDESL-KTAKTIDLCQNPLTKEK-KLDRARRQV 1411 >SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1463 Score = 25.4 bits (53), Expect = 4.4 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = +1 Query: 211 HHSIYRRFFAI*IQKLIISLYLTFNIYKRSNDGVVIW 321 H+ +RRF+ I ++ L+I + L +IY +W Sbjct: 39 HYFHFRRFWTIWLKSLVIMVLLFTHIYDCYKTNESVW 75 >SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 236 Score = 25.0 bits (52), Expect = 5.8 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -3 Query: 80 FYFIVFRKYTIQYTIYFAITSNLN 9 FY V IQY +YF T+ LN Sbjct: 18 FYDTVIPHSVIQYPVYFNYTTGLN 41 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,744,634 Number of Sequences: 5004 Number of extensions: 32261 Number of successful extensions: 73 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 73 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 178394480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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