Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H16
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0073 - 28155156-28155296,28155422-28155682,28155858-281559... 72 3e-13
07_01_0908 + 7653813-7653849,7655220-7655350,7655946-7656020,765... 70 8e-13
03_05_0445 - 24401899-24401992,24402098-24402162,24402262-244022... 46 2e-05
07_03_0370 - 17366063-17366197,17367445-17367483,17367930-173680... 36 0.016
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 33 0.11
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 31 0.61
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 29 2.5
03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47... 29 2.5
07_01_0434 - 3302926-3303072,3303402-3303545,3303644-3304293,330... 28 3.3
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 28 4.3
11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754 27 5.7
05_01_0115 + 804674-804766,805729-806442 27 5.7
02_03_0305 + 17527906-17528148,17528986-17529051,17529624-17530808 27 5.7
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821 27 5.7
>11_08_0073 -
28155156-28155296,28155422-28155682,28155858-28155962,
28156563-28156693,28156905-28156941
Length = 224
Score = 71.7 bits (168), Expect = 3e-13
Identities = 30/55 (54%), Positives = 47/55 (85%)
Frame = +2
Query: 305 MEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQ 469
M ++FG R TP E+LR+N+R L+K++R+++RER ++ QEKK+IA+IKK+AK+GQ
Sbjct: 1 MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQ 55
>07_01_0908 +
7653813-7653849,7655220-7655350,7655946-7656020,
7657007-7657111,7657648-7657911,7658474-7658614
Length = 250
Score = 70.1 bits (164), Expect = 8e-13
Identities = 30/55 (54%), Positives = 45/55 (81%)
Frame = +2
Query: 305 MEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQ 469
M +LFG R TP E+LR+N+R L++++R+++RER ++ QEKK+I +IKK AKEGQ
Sbjct: 1 MSFLFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQ 55
>03_05_0445 -
24401899-24401992,24402098-24402162,24402262-24402297,
24402419-24402499,24403084-24403155,24403265-24403336,
24403628-24403678,24404374-24404408,24404615-24404659,
24405067-24405100
Length = 194
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/51 (39%), Positives = 35/51 (68%)
Frame = +2
Query: 314 LFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEG 466
+F ++ P E LR ++R ++ A R ++RE ++ +EKK++A+IKK AK G
Sbjct: 3 IFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVAEIKKTAKTG 53
>07_03_0370 -
17366063-17366197,17367445-17367483,17367930-17368001,
17368287-17368478,17368660-17368781,17369394-17369496,
17370786-17370836,17371199-17371275,17371646-17371757
Length = 300
Score = 35.9 bits (79), Expect = 0.016
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 326 RMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAK 460
R TP + LR+ QR L R LDR+ ++++EK V I++ AK
Sbjct: 11 RPTPQQQLREWQRKLRNECRVLDRQIRDVQREEKNVEKSIREAAK 55
>08_02_1091 + 24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 33.1 bits (72), Expect = 0.11
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +2
Query: 341 EMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKK 451
E ++N+R + KA +L+RER+K E+++K + KK
Sbjct: 1046 EQKKQNEREMRKAAAELERERVKQEREQKLKQMEQKK 1082
>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 30.7 bits (66), Expect = 0.61
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 341 EMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKK 451
E ++N+R + KA L+RER+K E++ K+ + KK
Sbjct: 1339 EEKKQNEREMRKAAAKLERERLKQEKELKQKQEEQKK 1375
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +2
Query: 290 IKEVMMEWLFGHRMTP----DEMLRKNQRALNKAMRDLDRERMKMEQQEKKV 433
I EV EW ++ P E+ +N+ A + D+D E+ + ++Q KK+
Sbjct: 480 INEVSHEWHSSNKQKPLSDSKEITSENEEAKEGKVEDVDEEKEEKKKQGKKI 531
>03_01_0057 +
476172-476283,476337-476449,476532-476634,477089-477210,
477303-477497,477627-477701,478082-478179,478328-478421
Length = 303
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 332 TPDEMLRKNQRALNKAMRDLDRE-RMKMEQQEKKVIADIKKLAKE 463
TP + LR+ QR L R++DR+ R M E AD+++ K+
Sbjct: 13 TPQQQLREWQRRLRNEGRNIDRQIRAMMLMVESGASADVQREEKK 57
>07_01_0434 -
3302926-3303072,3303402-3303545,3303644-3304293,
3304410-3304493,3304651-3304703,3305127-3305197,
3305285-3305362,3305775-3305903,3305988-3306044,
3306693-3306923,3307748-3307882,3308609-3308684,
3308768-3309024,3309095-3309202,3309328-3309526,
3309600-3309604
Length = 807
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 335 PDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEG 466
PDEML ++ N ++ +++ EQQ VI+ K L ++G
Sbjct: 295 PDEMLDMAEKLANANPEEVAAMKVQAEQQMSYVISGAKMLKQQG 338
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +2
Query: 284 ISIKEVMMEWLFGHRMTPDEMLRKNQRALNKAMRDLDR---ERMKMEQQEKKVIADIKKL 454
+S E ++WL + ++ NQ+ + + +L+R ER+K+E++ ++V ++ +L
Sbjct: 653 VSDAEKELKWLRSATGSAEKEYEINQKKIAELKMELERERNERIKLEEEYEEVKNEVSEL 712
Query: 455 AKE 463
E
Sbjct: 713 TSE 715
>11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754
Length = 203
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 350 RKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQ 469
++ + AL +A +RER + E+ EKK+ + KK A+E Q
Sbjct: 102 KEKEAALVEAQHKAERERKEREELEKKLEEERKK-AEEAQ 140
>05_01_0115 + 804674-804766,805729-806442
Length = 268
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 311 WLFGHRMTPDEMLRKNQRALNKAMRDLD--RERMKMEQQEKKVIAD-IKKLAKE 463
W F + P E + + +++L +LD +E +K ++Q +AD ++ +AKE
Sbjct: 21 WAFQDDLQPQESMEELKQSLMATTLELDAAKEELKKKEQSIAKLADLVRHVAKE 74
>02_03_0305 + 17527906-17528148,17528986-17529051,17529624-17530808
Length = 497
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 350 RKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQ 469
++ Q + DL+R + MEQ++ K+IA +++ +K Q
Sbjct: 177 KQQQSGTMNQIEDLERRVLGMEQRQTKMIAFLQQASKNPQ 216
>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
Length = 998
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 351 RSISSGVIRCPNNHSIITSFIDIKC*IQTDY*LLYSNSK 235
R +S+GV+RC H I+ + KC + LL S SK
Sbjct: 517 RVVSNGVVRCCKVHDIMLEMMTEKCMEENFISLLGSPSK 555
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,000,641
Number of Sequences: 37544
Number of extensions: 168501
Number of successful extensions: 394
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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