Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H16
(469 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 3e-19
SB_17945| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.21
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4) 32 0.21
SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.21
SB_48777| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.36
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.48
SB_44005| Best HMM Match : CUE (HMM E-Value=0.38) 30 0.83
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 30 0.83
SB_48470| Best HMM Match : HNOB (HMM E-Value=0) 29 2.5
SB_36727| Best HMM Match : CS (HMM E-Value=0.0013) 28 3.4
SB_46974| Best HMM Match : TPR_1 (HMM E-Value=1.5e-10) 28 3.4
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 28 3.4
SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06) 27 5.9
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 91.5 bits (217), Expect = 3e-19
Identities = 41/55 (74%), Positives = 50/55 (90%)
Frame = +2
Query: 305 MEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQ 469
+E+LFG + TP+EML++NQRALN+AMRDLDRER KMEQQEKK+I DIKK+AK GQ
Sbjct: 3 LEFLFGRKKTPEEMLKQNQRALNRAMRDLDRERSKMEQQEKKIINDIKKMAKMGQ 57
>SB_17945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 32.3 bits (70), Expect = 0.21
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +2
Query: 341 EMLRKNQRALNKAMRDLDRERMKMEQQEKKV 433
E +R+ +R LN+ R+L R++ +E+QEK++
Sbjct: 49 EQMRQQKRQLNRTQRELARDKNALERQEKQL 79
>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
Length = 311
Score = 32.3 bits (70), Expect = 0.21
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 341 EMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 463
E L K + LNK L++ER ++ ++ K+V + ++L KE
Sbjct: 237 ERLNKEKEQLNKEKEQLNKERKRLNKERKRVNKERERLNKE 277
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 341 EMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 463
E L K + LNK + L++ER ++ ++ +++ + ++L KE
Sbjct: 244 EQLNKEKEQLNKERKRLNKERKRVNKERERLNKEKERLNKE 284
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/40 (25%), Positives = 27/40 (67%)
Frame = +2
Query: 341 EMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAK 460
E L K ++ LNK + +++ER ++ ++++++ + ++L K
Sbjct: 251 EQLNKERKRLNKERKRVNKERERLNKEKERLNKETERLDK 290
>SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 32.3 bits (70), Expect = 0.21
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 341 EMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 463
E L K + LNK L++ER ++ ++ K+V + ++L KE
Sbjct: 496 ERLNKEKEQLNKEKEQLNKERKRLNKERKRVNKERERLNKE 536
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 347 LRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 463
L K + LNK M LD+ R ++ ++ K++ + K+L KE
Sbjct: 575 LNKEKERLNKEMERLDKTRERLNKERKRLNKERKRLNKE 613
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 341 EMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 463
E L K + LNK + L++ER ++ ++ K++ + ++L KE
Sbjct: 587 ERLDKTRERLNKERKRLNKERKRLNKERKRLNKEKERLNKE 627
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 341 EMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 463
E L K + LNK + L++ER ++ ++ +++ + ++L KE
Sbjct: 503 EQLNKEKEQLNKERKRLNKERKRVNKERERLNKEKERLNKE 543
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/40 (25%), Positives = 27/40 (67%)
Frame = +2
Query: 341 EMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAK 460
E L K ++ LNK + +++ER ++ ++++++ + ++L K
Sbjct: 510 EQLNKERKRLNKERKRVNKERERLNKEKERLNKETERLDK 549
>SB_48777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 31.5 bits (68), Expect = 0.36
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +2
Query: 347 LRKNQRALNKAMRDLDRERMKMEQQEKKVIA 439
+R+ +R LN+ R+L R++ +E+QEK++ A
Sbjct: 1 MRQQKRQLNRTQRELARDKNALERQEKQLAA 31
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 31.1 bits (67), Expect = 0.48
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +2
Query: 326 RMTPDEMLRKNQRALNKAMRDLDR--ERMKMEQQEKKVIADIKK 451
R + D +LR+N+RA+N A +D E++ + Q+ + V+A KK
Sbjct: 669 RRSADVLLRRNKRAINTAYFKVDPRVEKLWLPQESETVLASSKK 712
>SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)
Length = 761
Score = 30.3 bits (65), Expect = 0.83
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 326 RMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKK 430
++TP++ LR+ Q A +K + ++ K + QEKK
Sbjct: 318 KLTPEDSLRRKQAAQDKKQAKVREKQAKQQAQEKK 352
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 338 DEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAK 460
D + R+ RA+ DL+RER + +++++ +I D +K K
Sbjct: 1410 DMLARERNRAIEDCKDDLERERRRAQKEKEDLIYDHEKREK 1450
>SB_48470| Best HMM Match : HNOB (HMM E-Value=0)
Length = 681
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 338 DEMLRKNQRALNKAMRDLDRERMKMEQQEKKVI-ADIKKLAKEGQ 469
D++L K+ R L K M+ ++RERM+ Q ++I I KEGQ
Sbjct: 631 DQLLEKS-RELEKNMKRVERERMRSNQLLYQMIPKQIADRLKEGQ 674
>SB_36727| Best HMM Match : CS (HMM E-Value=0.0013)
Length = 272
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/19 (52%), Positives = 18/19 (94%)
Frame = +2
Query: 395 RERMKMEQQEKKVIADIKK 451
R++MKME++E++ +ADIK+
Sbjct: 152 RQQMKMEEEERQRVADIKE 170
>SB_46974| Best HMM Match : TPR_1 (HMM E-Value=1.5e-10)
Length = 466
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/19 (52%), Positives = 18/19 (94%)
Frame = +2
Query: 395 RERMKMEQQEKKVIADIKK 451
R++MKME++E++ +ADIK+
Sbjct: 152 RQQMKMEEEERQRVADIKE 170
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 338 DEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQ 469
D+ +RK + + R + ER + E++EKK D K +EG+
Sbjct: 625 DDEMRKLEEERTERDRQKEEERKRREEEEKKKREDEVKREEEGR 668
>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 858
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 335 PDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKL 454
PDE KN LNK D D E E + + + +++K+
Sbjct: 816 PDESPNKNDERLNKKFADADSEVAGGETENEPKLLNVQKV 855
>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1177
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 281 LISIKEVMMEWLFGHRMTP-DEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLA 457
++ + E ++ L G R P D LNK +L RE++ + Q +K+ + ++++
Sbjct: 72 IVRVSESVVRRLKGQRDLPLDPKEDVTPEELNKLWNELQREKVHLHSQREKIQSMLERVY 131
Query: 458 KEGQ 469
+ Q
Sbjct: 132 QREQ 135
>SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)
Length = 1231
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Frame = +2
Query: 350 RKNQRALNKAMRDLD---RERMKMEQQEKKVIADIKKLAKE 463
R+ Q+ L + +++ + RER++ +Q+E + I +K+L KE
Sbjct: 994 RQKQKQLQEQLQEQEKALRERLQRQQEELEEIEKVKQLEKE 1034
>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 311 WLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEK 427
WLFG + DE L + R + R L R + ++E+
Sbjct: 448 WLFGREESGDEALIRRYRCDKRRERQLKHVRRRRRREER 486
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,411,928
Number of Sequences: 59808
Number of extensions: 218143
Number of successful extensions: 542
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -