Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H16
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domai...    69   2e-12
At5g44560.1 68418.m05458 SNF7 family protein contains Pfam domai...    44   4e-05
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains...    30   0.90 
At1g68790.1 68414.m07863 expressed protein                             28   2.7  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   3.6  
At2g36240.1 68415.m04448 pentatricopeptide (PPR) repeat-containi...    28   3.6  
At5g10720.1 68418.m01242 sensory transduction histidine kinase-r...    27   4.8  

>At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 225

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 30/56 (53%), Positives = 45/56 (80%)
 Frame = +2

Query: 302 MMEWLFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQ 469
           MM  +FG R TP E+LR+N+R L+K++R+++RER  ++ QEKK+I +IKK AK+GQ
Sbjct: 1   MMNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQ 56


>At5g44560.1 68418.m05458 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 222

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 19/51 (37%), Positives = 34/51 (66%)
 Frame = +2

Query: 314 LFGHRMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEG 466
           +F  + TP + LR ++R +  A R ++RE   ++ +EK+++A+IKK AK G
Sbjct: 3   IFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTG 53


>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 644

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +2

Query: 338 DEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 463
           DE+ RK  +A N+A R  ++E +KM Q+E  +  ++ + A E
Sbjct: 170 DELARKRMQAENEAQRTRNQELVKM-QEESAIRREVARRATE 210


>At1g68790.1 68414.m07863 expressed protein
          Length = 1085

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 347 LRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQ 469
           L K +  + K  +DLD     ++++EK + A+ KKL  E +
Sbjct: 410 LEKKEEGVKKKEKDLDARLKTVKEKEKALKAEEKKLHMENE 450


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 338 DEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKE 463
           +++ R+ +R   K  R+ +RER KME++  +   D  KL KE
Sbjct: 150 EKLEREKEREREKIEREKEREREKMEREIFEREKDRLKLEKE 191


>At2g36240.1 68415.m04448 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 379

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 342 SSGVIRCPNNHSIITSFIDIKC*I-QTDY*LLYSNSKKSTIYGVMN 208
           SSG+  CP    I  S ID  C   + DY LL  ++ K  I G  N
Sbjct: 29  SSGIFSCPELEPIFRSAIDAYCRARKMDYALLAFDTMKRLIDGKPN 74


>At5g10720.1 68418.m01242 sensory transduction histidine
           kinase-related similar to Sensor protein rcsC (Capsular
           synthesis regulator component C) (SP:Q56128) {Salmonella
           typhi}; sensory transduction histidine kinase slr1759,
           Synechocystis sp., PIR:S75142
          Length = 950

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 362 RALNKAMRDLDRERMKMEQQEKKVIADIK 448
           R L + +++LDR+R + E +E K+I + K
Sbjct: 88  RLLKEELKNLDRQREEAEAKELKIIEEYK 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,654,223
Number of Sequences: 28952
Number of extensions: 153700
Number of successful extensions: 368
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)