Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H15
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.24 
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    29   0.41 
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   0.96 
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   1.7  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   5.1  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    25   6.7  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.9  

>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 390 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 283
           F+  S    IS  ++N   R Y+ I    YCF Y++
Sbjct: 4   FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 129 ELIISILEYSLWVDVTGQCQGREGKYGYYNLHV 31
           +L  + L+ ++WV VT   +   G YGY  LH+
Sbjct: 212 DLYSNNLKDAVWVAVTNYMKNLVGNYGYTELHI 244


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
 Frame = +1

Query: 112 NGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAI------- 270
           N N Q  A    + + KN   S++    S     + L IAS   +H+ +   I       
Sbjct: 59  NANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEW 118

Query: 271 -DFPNDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNEL 393
            +    +   ++  D+ +K+R +  VDL+   K      NEL
Sbjct: 119 AEIMKKDPNMSLMQDICEKIRKLDIVDLRAPKKPEKEAMNEL 160


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 3   TREKHESHRQHEDYNNHI 56
           +  +H SHR+HE Y  H+
Sbjct: 145 SNHRHGSHRRHEPYRTHL 162


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 138 TCGELIISILEYSLWVDVTGQCQGREGKYGY 46
           TCG L+I I    LWV++T +    +G  G+
Sbjct: 22  TCGLLLIGIACNVLWVNMTARNILPKGNLGF 52


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 56  LPSRP*HWPVTSTHKEYSRME 118
           +P RP HW  T+T  E  RME
Sbjct: 110 IPRRP-HWDQTTTAVELDRME 129


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
 Frame = -2

Query: 251 SCDSPVEAIAS-WANGIMT 198
           SCDSPV+++AS  A GI+T
Sbjct: 51  SCDSPVKSLASHGAVGIVT 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,993
Number of Sequences: 5004
Number of extensions: 28096
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)