Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H15
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310...    29   1.6  
06_01_0837 - 6355315-6355342,6356185-6356361,6356579-6356662,635...    27   8.7  

>03_02_0834 -
           11630288-11630500,11630531-11630623,11630844-11631050,
           11631301-11633089,11633817-11634145
          Length = 876

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +1

Query: 241 ESHDELLKAIDFPNDNVTKAVFTDLNQKVRSI--KGVDLKLANKVYIANGNELNDQFAVV 414
           + HD LLK+    NDN+TK    + NQ +  +  KG D K  +KV        N+Q   +
Sbjct: 467 KEHDTLLKSSVELNDNLTKTA-EERNQILECLKEKGGDNKALHKVIARLQRISNEQEKTI 525

Query: 415 S--RDVFNSE 438
           +  R  FN+E
Sbjct: 526 TGLRQGFNAE 535


>06_01_0837 -
           6355315-6355342,6356185-6356361,6356579-6356662,
           6356989-6357542,6358086-6358322
          Length = 359

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 111 LEYSLWVDVTGQCQGREGKYGYYNLHV-VGD 22
           L+ S W+DV  Q +G  G+Y    LH+ +GD
Sbjct: 103 LKESKWIDVIDQFKGILGQYSDLPLHIALGD 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,516,876
Number of Sequences: 37544
Number of extensions: 160122
Number of successful extensions: 291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)