Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H15
(438 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6223| Best HMM Match : Ras (HMM E-Value=0) 36 0.019
SB_19092| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.42
SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30) 28 3.9
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06) 28 3.9
SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2) 28 3.9
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 27 5.1
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19) 27 5.1
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 27 6.8
SB_47041| Best HMM Match : DUF1168 (HMM E-Value=0.41) 27 8.9
>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
Length = 1665
Score = 35.5 bits (78), Expect = 0.019
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +1
Query: 82 SDIDPQRVLKNGNDQFTARMFNEVVKKNPDKSVILSAFSVMIPLAQLAIASTGES 246
SD++ +R + Q AR E++K PD+S L A ++ L LA+AST ++
Sbjct: 126 SDLEYERTVSTAEGQELARQLREIIKLVPDRSPSLQAQEALLGLG-LALASTQQN 179
>SB_19092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 31.1 bits (67), Expect = 0.42
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 269 IALRSSSCDS-PVEAIASWANGIMTENADNI 180
+ LR ++CD P++A+A W NG AD +
Sbjct: 159 VVLRKNACDDVPLDALADWCNGKWPPRADGL 189
>SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
Length = 503
Score = 27.9 bits (59), Expect = 3.9
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 106 LKNGNDQFTARMFNEVVKKNPDKSVIL-SAFSVMIPLAQLAIASTGESHDELLKAIDFPN 282
L+ GN + +N+ +K NPD IL +V + + A E + LKA FPN
Sbjct: 51 LEQGNYKQALACYNQALKHNPDDPTILWERAAVCYQMGDVKKAL--EYYQVALKA--FPN 106
Query: 283 DNVTK 297
D++ K
Sbjct: 107 DDLEK 111
>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
Length = 160
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 205 IPLAQLAIASTGESHDELLKAIDFPNDNVTKAVFTDLNQKV 327
+ L+ L A+TG + DE+L+ ID TK V T ++ K+
Sbjct: 78 LKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKL 118
>SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)
Length = 953
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 314 KSVNTALVTLSLGKSIALRSSSCDSPVEAIASWANGIMTENADNI 180
K +ALVT + K++ +S P A AS +N T+N D +
Sbjct: 633 KKPQSALVTSTKTKAVEPQSLMASKPSSASASPSNTYRTQNTDQV 677
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 27.5 bits (58), Expect = 5.1
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = -2
Query: 302 TALVTLSLGKSIALRSSSCDSPVEAIASWANGIMTENADNIXXXXX--XXXXXXLNIRAV 129
+ALVT + K++ +S P A AS +N T+N D + I+A+
Sbjct: 382 SALVTSTKTKAVEPQSVMASKPSSASASPSNTYRTQNTDQVKSGSSIHAPTSNKDRIKAI 441
Query: 128 N*SFPFLSTLCGSMSLANVKAARA 57
+ S F T S VK A A
Sbjct: 442 SSSATFPKTTERFASKPEVKDACA 465
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 302 TALVTLSLGKSIALRSSSCDSPVEAIASWANGIMTENADNI 180
+ALVT + K++ +S P A AS +N T+N D +
Sbjct: 1465 SALVTSTKTKAVEPQSVMASKPCSASASPSNTYRTQNTDQV 1505
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 302 TALVTLSLGKSIALRSSSCDSPVEAIASWANGIMTENADNI 180
+ALVT + K++ +S P A AS +N T+N D +
Sbjct: 71 SALVTSTKTKAVEPQSVMASKPSSASASPSNTYRTQNTDQV 111
>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1026
Score = 27.5 bits (58), Expect = 5.1
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = -2
Query: 302 TALVTLSLGKSIALRSSSCDSPVEAIASWANGIMTENADNIXXXXX--XXXXXXLNIRAV 129
+ALVT + K++ +S P A AS +N T+N D + I+A+
Sbjct: 379 SALVTSTKTKAVEPQSVMASKPSSASASPSNTYRTQNTDQVKSGSSIHAPTSNKDRIKAI 438
Query: 128 N*SFPFLSTLCGSMSLANVKAARA 57
+ S F T S VK A A
Sbjct: 439 SSSATFPKTTERFASKPEVKDACA 462
>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
Length = 754
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 302 TALVTLSLGKSIALRSSSCDSPVEAIASWANGIMTENADNI 180
+ALVT + K++ +S P A AS +N T+N D +
Sbjct: 336 SALVTSTKTKAVEPQSVMASKPCSASASPSNTYRTQNTDQV 376
>SB_47041| Best HMM Match : DUF1168 (HMM E-Value=0.41)
Length = 225
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 302 TALVTLSLGKSIALRSSSCDSPVEAIASWANGIMTENADNI 180
+ALVT + K++ +S P A AS +N T+N D +
Sbjct: 28 SALVTSTKTKAVEPQSVMASKPSSASASPSNTYRTQNTDQV 68
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.131 0.352
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,465,358
Number of Sequences: 59808
Number of extensions: 196308
Number of successful extensions: 345
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -