Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H15
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15980.1 68418.m01868 pentatricopeptide (PPR) repeat-containi...    28   2.4  
At2g34250.1 68415.m04190 protein transport protein sec61, putati...    28   3.2  
At1g29310.1 68414.m03583 protein transport protein sec61, putati...    28   3.2  
At2g43340.1 68415.m05389 expressed protein                             27   5.5  
At3g01220.1 68416.m00028 homeobox-leucine zipper protein, putati...    27   7.3  
At1g80200.1 68414.m09386 expressed protein ; expression supporte...    27   7.3  
At1g74240.1 68414.m08598 mitochondrial substrate carrier family ...    27   7.3  
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ...    26   9.7  

>At5g15980.1 68418.m01868 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 668

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
 Frame = +1

Query: 115 GNDQFTARMFNEVVK-KNPDKSVILSAF-SVMIPLAQLAIASTGESHDELLKAIDFPNDN 288
           G ++F  R  N VV+ ++    V +  +  V     Q  +        E+  A    ++N
Sbjct: 298 GKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEAVDLFEIAMAGSSSSNN 357

Query: 289 VTKAVFTDLNQKVRSIKGVDLKL---ANKVYIANGNELND 399
            T   F  L +K+ + K +D+ L   A KVY  NGN L D
Sbjct: 358 PTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTD 397


>At2g34250.1 68415.m04190 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 438 FRIKHISGHNSKLII*FITVSNVYFISQFEINSFNRSYFL 319
           + IK     N  +I+    VSN+YFISQ     F+ ++F+
Sbjct: 282 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFV 321


>At1g29310.1 68414.m03583 protein transport protein sec61, putative
           similar to PfSec61 [Plasmodium falciparum] GI:3057044;
           contains Pfam profile PF00344: eubacterial secY protein
          Length = 475

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 438 FRIKHISGHNSKLII*FITVSNVYFISQFEINSFNRSYFL 319
           + IK     N  +I+    VSN+YFISQ     F+ ++F+
Sbjct: 282 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKFSGNFFV 321


>At2g43340.1 68415.m05389 expressed protein
          Length = 189

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 260 RSSSCDSPVEAIASWANGIMTENADNI 180
           +SS  DSPV  IASW      +N D++
Sbjct: 144 KSSVLDSPVSPIASWKISSPGDNPDDV 170


>At3g01220.1 68416.m00028 homeobox-leucine zipper protein, putative
           / HD-ZIP transcription factor, putative similar to
           homeobox-leucine zipper protein, HAT7 (GB:Q00466)
           [Arabidopsis thaliana]
          Length = 286

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
 Frame = -2

Query: 314 KSVNTALVTLS---LGKSIALRSSSCDS----PVEAIASWANGIMTENADNI 180
           KS N +L+  +   L + +AL++  C+       EA ASW+N   TEN+ +I
Sbjct: 159 KSDNASLLAYNKKLLAEVMALKNKECNEGNIVKREAEASWSNNGSTENSSDI 210


>At1g80200.1 68414.m09386 expressed protein ; expression supported
           by MPSS
          Length = 234

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 302 TALVTLSLGKSIALRSSSCDSPVEAIAS 219
           T  + L + + +A R+ SC++P+E I+S
Sbjct: 51  TDSILLGIEEIVACRNKSCETPLEVISS 78


>At1g74240.1 68414.m08598 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 364

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 117 SILEYSLWVDVTGQCQGREGKYGYY 43
           S ++Y  W+D  GQ   +EG  G++
Sbjct: 284 STIKYKGWLDAVGQIWRKEGPQGFF 308


>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 580

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -1

Query: 156 DDFIKHTCGELIISILEYSLWVDVTGQCQG---REGKYGYYNLHVVGDFRVSPSC 1
           D+ IK+ C E  + + +Y    D   QCQ    R   Y +YN  V  DF +   C
Sbjct: 278 DNMIKYFCHEHHLKLEKYDSVRDAKKQCQACILRIDSYDFYNC-VQCDFFLHEVC 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.131    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,990,823
Number of Sequences: 28952
Number of extensions: 140555
Number of successful extensions: 289
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)