Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H14
(512 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 97 2e-34
SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 29 2.2
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_21281| Best HMM Match : CRA_rpt (HMM E-Value=5.7) 28 5.2
SB_48825| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_55420| Best HMM Match : fn3 (HMM E-Value=0) 27 9.1
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 96.7 bits (230), Expect(2) = 2e-34
Identities = 44/63 (69%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = +3
Query: 51 THNTMGD-IEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGH 227
T TM + + DT F +G+SGAS T+P QCS+LRKNG V++K RPCKIVEMSTSKTGKHGH
Sbjct: 582 TPKTMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGH 641
Query: 228 AKV 236
AKV
Sbjct: 642 AKV 644
Score = 66.5 bits (155), Expect(2) = 2e-34
Identities = 27/59 (45%), Positives = 42/59 (71%)
Frame = +3
Query: 336 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGVQLRTDFDSGKELLCTVLKSCGEECVI 512
++T+I +DGYL LM DNGD R D+K+ D D+ ++R F++ + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVV 701
>SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 995
Score = 31.9 bits (69), Expect = 0.32
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 165 TLRNRSYAGRSTAWEMLP-RHRSLRSRNVYLQCHPLCC 55
T++ S A R+ +EM P + R+ +S+ +YL C L C
Sbjct: 792 TVKFNSMASRAQRFEMAPFKFRNAKSKTIYLHCRVLVC 829
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2
Query: 496 PQDFSTVHSNSLPLSKSVRSCTPRSPSGILRSSRRSPLSAMRVR 365
P+ S V S +LP+ V C P SPS I RS P VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +3
Query: 261 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 389
NG Y CP N D + EDY + D YLT D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441
>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.7 bits (61), Expect = 3.0
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Frame = +3
Query: 81 THFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKT-----GKHGHAKVHLV 245
T E+G + P QC+ + F+ +RP + + S ++ G + L
Sbjct: 865 TRRESGQRVSHGLSPKQCAVSVVSSFMDSGARPRRFLPGSQARPRRFLPGSQPRPRRFLP 924
Query: 246 GIDIFNGKKYE--DICPSTHNMDVPHVKREDYQLTDISD-DGYLTLMADNGDLREDLKIP 416
+ + G Y ++ P +D+ + Y++ ++ D YL L D GD LK+
Sbjct: 925 VLKLDPGDFYRVLNLDPGDFYLDLKLDPGDFYRVLNLDPGDFYLDLKLDPGDFYPVLKLD 984
Query: 417 DGDLGVQLRTD 449
GD L+ D
Sbjct: 985 PGDFYPVLKRD 995
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 502 SSPQDFSTVHSNSLPLSKSVRSCTPRSPSGILRSSRRSPL 383
SSP + T S PL+ RS PRSP ++ RSP+
Sbjct: 1681 SSP--YRTPSDRSSPLTVGGRSSRPRSPPRLMEPRPRSPV 1718
>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 303 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGVQLRTDFDSGKEL 470
+D+P+ K + + L ++DD L+ + D L E L PD + R D G E
Sbjct: 37 LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94
Query: 471 LCTVLKSCGEEC 506
LC L+ C
Sbjct: 95 LCMTLRRFAYPC 106
>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 222 RVCQFWKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQ 73
R C++ R + R TLR Y R+ + + PRH +LR R L+
Sbjct: 119 RPCRYTLRPCRYTLRPRYCTLRPCRYTLRTCRYTLRPRHYTLRPRRYTLR 168
>SB_21281| Best HMM Match : CRA_rpt (HMM E-Value=5.7)
Length = 403
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 25 TPYRN*NSVHTTQWVTLKIH--ISRPETPVPRQHFPCSAPPCVRT 153
TP + S T L+IH +S T P ++F SAPPC+ T
Sbjct: 142 TPVESTASDITPLLTQLEIHSFLSFTSTVPPGEYFTSSAPPCLAT 186
>SB_48825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 484 STVHSNSLPLSKSVRSCTPRSPSGILRSSRRSP 386
S S +PL V TP +PSG RS R+P
Sbjct: 286 SNKDSELIPLDYKVPDNTPSTPSGPARSRSRTP 318
>SB_55420| Best HMM Match : fn3 (HMM E-Value=0)
Length = 789
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 201 WTSRQSCRGDSSTLRNRSYAGRST--AWEMLPRHRS 100
WTS+ + G + S+ S +W +LPRH+S
Sbjct: 110 WTSQTAPTGSPRVINASSFNSTSVVLSWNILPRHQS 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,855,269
Number of Sequences: 59808
Number of extensions: 402933
Number of successful extensions: 1296
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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