Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H14
         (512 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic t...   273   1e-73
AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic i...   271   3e-73
AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p pro...   268   3e-72
AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB...   268   3e-72
AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA...   268   3e-72
BT024354-1|ABC86416.1|  885|Drosophila melanogaster IP09037p pro...    29   4.9  
BT022132-1|AAY51527.1|  885|Drosophila melanogaster IP08837p pro...    29   4.9  
AY484701-1|AAR85347.1|  881|Drosophila melanogaster dysfusion pr...    29   4.9  
AE014297-3920|AAF56569.3|  881|Drosophila melanogaster CG32474-P...    29   4.9  
AB095028-1|BAE53416.1|  918|Drosophila melanogaster bHLH-PAS pro...    29   4.9  

>AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic
           translation initiationfactor 5a protein.
          Length = 159

 Score =  273 bits (669), Expect = 1e-73
 Identities = 124/150 (82%), Positives = 138/150 (92%)
 Frame = +3

Query: 63  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 242
           M +++D HFET DSGAS T+PMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-HFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 243 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 422
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM D+GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTDSGDLREDLKVPEG 119

Query: 423 DLGVQLRTDFDSGKELLCTVLKSCGEECVI 512
           +LG QLR DFDSGK+LLCTVLK+CGEECVI
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACGEECVI 149


>AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic
           initiation factor 5A protein.
          Length = 159

 Score =  271 bits (665), Expect = 3e-73
 Identities = 123/150 (82%), Positives = 138/150 (92%)
 Frame = +3

Query: 63  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 242
           M +++D HFET DSGAS T+PMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-HFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 243 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 422
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 423 DLGVQLRTDFDSGKELLCTVLKSCGEECVI 512
           +LG QLR DFDSGK+LLCTVLK+CGEECVI
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACGEECVI 149


>AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p
           protein.
          Length = 159

 Score =  268 bits (657), Expect = 3e-72
 Identities = 122/150 (81%), Positives = 137/150 (91%)
 Frame = +3

Query: 63  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 242
           M +++D  FET DSGAS T+PMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 243 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 422
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 423 DLGVQLRTDFDSGKELLCTVLKSCGEECVI 512
           +LG QLR DFDSGK+LLCTVLK+CGEECVI
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACGEECVI 149


>AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB,
           isoform B protein.
          Length = 159

 Score =  268 bits (657), Expect = 3e-72
 Identities = 122/150 (81%), Positives = 137/150 (91%)
 Frame = +3

Query: 63  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 242
           M +++D  FET DSGAS T+PMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 243 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 422
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 423 DLGVQLRTDFDSGKELLCTVLKSCGEECVI 512
           +LG QLR DFDSGK+LLCTVLK+CGEECVI
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACGEECVI 149


>AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA,
           isoform A protein.
          Length = 159

 Score =  268 bits (657), Expect = 3e-72
 Identities = 122/150 (81%), Positives = 137/150 (91%)
 Frame = +3

Query: 63  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 242
           M +++D  FET DSGAS T+PMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 243 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 422
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 423 DLGVQLRTDFDSGKELLCTVLKSCGEECVI 512
           +LG QLR DFDSGK+LLCTVLK+CGEECVI
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACGEECVI 149


>BT024354-1|ABC86416.1|  885|Drosophila melanogaster IP09037p
           protein.
          Length = 885

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 210 FWKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQCHPLCCVY 49
           F ++ + +S +G S   R+   A  +   ++LP  +S R R   LQ   L CVY
Sbjct: 112 FTRFDANKSTKGASKMRRDLINAEIANLRDLLPLPQSTRQRLSQLQLMALVCVY 165


>BT022132-1|AAY51527.1|  885|Drosophila melanogaster IP08837p
           protein.
          Length = 885

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 210 FWKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQCHPLCCVY 49
           F ++ + +S +G S   R+   A  +   ++LP  +S R R   LQ   L CVY
Sbjct: 112 FTRFDANKSTKGASKMRRDLINAEIANLRDLLPLPQSTRQRLSQLQLMALVCVY 165


>AY484701-1|AAR85347.1|  881|Drosophila melanogaster dysfusion
           protein.
          Length = 881

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 210 FWKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQCHPLCCVY 49
           F ++ + +S +G S   R+   A  +   ++LP  +S R R   LQ   L CVY
Sbjct: 112 FTRFDANKSTKGASKMRRDLINAEIANLRDLLPLPQSTRQRLSQLQLMALVCVY 165


>AE014297-3920|AAF56569.3|  881|Drosophila melanogaster CG32474-PA
           protein.
          Length = 881

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 210 FWKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQCHPLCCVY 49
           F ++ + +S +G S   R+   A  +   ++LP  +S R R   LQ   L CVY
Sbjct: 112 FTRFDANKSTKGASKMRRDLINAEIANLRDLLPLPQSTRQRLSQLQLMALVCVY 165


>AB095028-1|BAE53416.1|  918|Drosophila melanogaster bHLH-PAS
           protein similar to humanNXF protein.
          Length = 918

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 210 FWKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQCHPLCCVY 49
           F ++ + +S +G S   R+   A  +   ++LP  +S R R   LQ   L CVY
Sbjct: 148 FTRFDANKSTKGASKMRRDLINAEIANLRDLLPLPQSTRQRLSQLQLMALVCVY 201


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,333,013
Number of Sequences: 53049
Number of extensions: 576952
Number of successful extensions: 2083
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2082
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1867000320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)