Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H14
(512 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 192 9e-50
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 183 8e-47
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 31 0.37
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 31 0.48
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 31 0.48
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 31 0.64
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 31 0.64
Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical pr... 30 0.85
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 2.6
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 28 3.4
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 28 3.4
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF039710-9|AAB96685.2| 172|Caenorhabditis elegans Hypothetical ... 27 7.9
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 192 bits (469), Expect = 9e-50
Identities = 92/148 (62%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
Frame = +3
Query: 75 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 254
+D HF TGDSGA+ATFP QCSALRKN VM+K RPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
Query: 255 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 431
IF KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+PD +LG
Sbjct: 67 IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELG 125
Query: 432 VQLRTDFDSGK-ELLCTVLKSCGEECVI 512
Q+R ++ + +L V+ + GEE ++
Sbjct: 126 QQIRDAYEKDEGSVLVQVVSAIGEEAIL 153
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 183 bits (445), Expect = 8e-47
Identities = 86/148 (58%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
Frame = +3
Query: 75 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 254
++ F++ +SGA+ATFP QCSALRKN VM++ RPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100
Query: 255 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 431
IF KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+P+GDLG
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLG 159
Query: 432 VQLRTDFDSGK-ELLCTVLKSCGEECVI 512
+R + + +L V+ +CGEE ++
Sbjct: 160 NTIREALEKDEGSVLVQVVAACGEEAIL 187
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 31.5 bits (68), Expect = 0.37
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 300 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGVQLRTDFDSGKELL 473
N +P +K++ Y L ++ GY+ + GDL+ KI D + ++ G+
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKAMLRPDGYERGRLRH 630
Query: 474 CTVLKSCGEEC 506
++K CG++C
Sbjct: 631 AALVKECGDKC 641
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 31.1 bits (67), Expect = 0.48
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -1
Query: 206 GSGHLDNLAGATLQHYETVLTQGGALHG--KCCRGTGVSGL-EMCIFNVTHCVVCTEFQL 36
G G++ + T Q E ++ + LH + G G S L +MC FN C + TEF+L
Sbjct: 297 GYGNMTDQVAITTQAKEKMILKMSGLHPQRRAALGYGKSELIKMCSFNGQQCNIDTEFKL 356
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 31.1 bits (67), Expect = 0.48
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -1
Query: 206 GSGHLDNLAGATLQHYETVLTQGGALHG--KCCRGTGVSGL-EMCIFNVTHCVVCTEFQL 36
G G++ + T Q E ++ + LH + G G S L +MC FN C + TEF+L
Sbjct: 297 GYGNMTDQVAITTQAKEKMILKMSGLHPQRRAALGYGKSELIKMCSFNGQQCNIDTEFKL 356
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 331 TTN*PISLTTATSPSWLTTVTCVKTSRYRTAISAYNCVPTLTAARSYCA 477
TT PI++ T SP+ TT T+R T + PT T + S CA
Sbjct: 485 TTTAPITVPTV-SPTTTTTRQTTTTARTSTTTTTTQAPPTTTTSTSQCA 532
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 331 TTN*PISLTTATSPSWLTTVTCVKTSRYRTAISAYNCVPTLTAARSYCA 477
TT PI++ T SP+ TT T+R T + PT T + S CA
Sbjct: 485 TTTAPITVPTV-SPTTTTTRQTTTTARTSTTTTTTQAPPTTTTSTSQCA 532
>Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical
protein M163.5 protein.
Length = 435
Score = 30.3 bits (65), Expect = 0.85
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -2
Query: 490 DFSTVHSNSLPLSKSVRSCTPRSPSGILRSSRRSPLSA 377
D +T HS+S K + T +SPS I SRRS SA
Sbjct: 314 DLTTKHSSSNSPHKLAEASTSKSPSPISECSRRSSSSA 351
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +3
Query: 255 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 410
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a) protein
1, isoform b protein.
Length = 1069
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 249 IDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKI--PDG 422
+D+ NG + T+N+ +P + QL ++S D Y +++ ++ + P+
Sbjct: 755 VDLLNGTYKSTVVIQTNNLGIPGLVTSMDQLYEVSCD-YSSMLGGRVQAGYNMTVTGPEA 813
Query: 423 DLGVQLRTDFDSGKELLCTVLKSCGEE 503
+L +Q R + G +L +L G E
Sbjct: 814 NL-IQPRGKIELGNPVLMQLLNGDGTE 839
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a) protein
1, isoform a protein.
Length = 1065
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 249 IDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKI--PDG 422
+D+ NG + T+N+ +P + QL ++S D Y +++ ++ + P+
Sbjct: 751 VDLLNGTYKSTVVIQTNNLGIPGLVTSMDQLYEVSCD-YSSMLGGRVQAGYNMTVTGPEA 809
Query: 423 DLGVQLRTDFDSGKELLCTVLKSCGEE 503
+L +Q R + G +L +L G E
Sbjct: 810 NL-IQPRGKIELGNPVLMQLLNGDGTE 835
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 181 QGRLFNITKPFLRRAEHCMGNVAEAPESPVSKCVSSMSP 65
Q R+ +P +R+++C G + E E ++KC +M P
Sbjct: 337 QRRVRFCNEPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 360 GYLTLMADNGDLREDLKIPDGDLGVQLRTDFDSGKELLC 476
GYL GD ++++K+ +G Q+ +D D K C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289
>AF039710-9|AAB96685.2| 172|Caenorhabditis elegans Hypothetical
protein C46E10.8 protein.
Length = 172
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 84 HFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKV 236
H ET DSGA A + A +GF + P ++ +S + + G +V
Sbjct: 86 HLETADSGAHAIPSLGSPAPSSSGFATMIVPPAPLLSAISSGSPQLGDTRV 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,659,861
Number of Sequences: 27780
Number of extensions: 278095
Number of successful extensions: 863
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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