Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H13
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 181 3e-46
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 180 9e-46
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 157 5e-39
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 31 0.45
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 28 4.2
11_06_0007 - 19171122-19172036 28 5.6
06_01_0637 + 4635136-4635969 28 5.6
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 28 5.6
04_01_0014 - 231228-233179,233522-233714 27 7.4
11_01_0445 - 3455449-3456096,3456348-3457958 27 9.8
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 27 9.8
02_02_0545 - 11376016-11378307 27 9.8
01_06_0763 + 31800556-31800618,31800659-31800802,31800859-318009... 27 9.8
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 181 bits (441), Expect = 3e-46
Identities = 83/170 (48%), Positives = 116/170 (68%), Gaps = 3/170 (1%)
Frame = +2
Query: 38 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 217
+Y+V+GR LP+ ++ P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I++I EI
Sbjct: 8 QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIF 67
Query: 218 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 397
EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 398 VEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 538
+ C+R KQFH S I FPL R K TF RP+ +
Sbjct: 128 TATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 180 bits (437), Expect = 9e-46
Identities = 81/170 (47%), Positives = 115/170 (67%), Gaps = 3/170 (1%)
Frame = +2
Query: 38 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 217
+Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
Query: 218 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 397
E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 ERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 398 VEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 538
+ C+R KQFH S I FPL R K TF RP+ +
Sbjct: 128 TATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 157 bits (381), Expect = 5e-39
Identities = 80/187 (42%), Positives = 114/187 (60%), Gaps = 20/187 (10%)
Frame = +2
Query: 38 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFLRQL 166
+Y+V+GR LP+ + P +Y+M++++ + + AKS+F W YFLR+L
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFLRKL 67
Query: 167 KKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYR 346
KK KK+ G++++I EI E++P IKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y
Sbjct: 68 KKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYT 127
Query: 347 DMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFA 517
+M +RHR R IQIIK + C+R KQFH I FPL R K TF
Sbjct: 128 EMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRKLKTTFK 187
Query: 518 YKRPSTY 538
RP+ +
Sbjct: 188 ASRPNLF 194
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 31.5 bits (68), Expect = 0.45
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -1
Query: 313 QVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPE 143
+++ F V I +L+ P+T VLNL + +F+ T+ L E L +P+ I E
Sbjct: 185 EISDFDVLIGHPIEKLIDVPETGVLNLKIEIIISFVPVLQSTNCLMEPLPIPEPIKE 241
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +2
Query: 140 RFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSV 319
++W + TGE+ S+K I +K +++ +G ++ + S +G + + Y +
Sbjct: 103 QYWMDENYISACFAPTGELQSVKLIRDKQTGQLQGYG-FIEFTSHAGAERVLQTYNGAMM 161
Query: 320 GGAVTQCYR 346
V Q YR
Sbjct: 162 PN-VEQTYR 169
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -2
Query: 450 WNCLTCGRRHAAALITST--LMICIECARALCLAPISL 343
W C CG R AA L+ L +C C P+ L
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCLCRACEARAEACPVCL 289
>06_01_0637 + 4635136-4635969
Length = 277
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 117 GEKILILYRGGFGSLSEGSLRPMTSYSFNSPFAFILAS 4
G IL LY G F + +G P+T YS P A AS
Sbjct: 202 GLTILELYTGSFPLVEQGQSIPLTCYSDGPPEAPATAS 239
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 492 W*TRFGSGKPILLVWNCLTCGRRHAAALITSTLMICIECARAL 364
W R+G KPI+ C CG+R+ + +C C++ L
Sbjct: 52 WKRRYGKYKPIVEPAKCQKCGKRNVRQAYHN---VCTACSKDL 91
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 153 KYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMT 46
+Y D AT EK L GGFGS+ +G LR +T
Sbjct: 407 RYSDLDHATKNFSEK---LGEGGFGSVFKGVLRDLT 439
>11_01_0445 - 3455449-3456096,3456348-3457958
Length = 752
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 437 VKQFHTSKIGFPLPKRVHQYKRLNTFAYK 523
V+ F SKIG P R+ QY L YK
Sbjct: 447 VRSFFESKIGEPWHGRIDQYDFLQQITYK 475
>06_03_0912 +
25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 79 AKASSIQNEDFLS*SYCGKISFLVFLEAVEEVQKD-YW*NCIH 204
+++ +Q FL+ S+C ++ L FLE E Q D Y N +H
Sbjct: 613 SQSGGLQKLSFLNVSHCSQLVKLSFLEEKLEKQPDHYLPNMVH 655
>02_02_0545 - 11376016-11378307
Length = 763
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/69 (23%), Positives = 28/69 (40%)
Frame = +3
Query: 198 YPSRKFQKRVLLRLRTLVSGCVTSLALVSTICXXXXXXXXXXXQSLSAIEIWELDTELVH 377
Y +R + VLL LR + GC + ++ + +S + L T+L+
Sbjct: 635 YTTRTIAEAVLLELRVCLRGCASDKEVLDRLKAVAETATASSPESGIHVHGARLWTQLMV 694
Query: 378 IQYRSSKWK 404
I + WK
Sbjct: 695 IPDQEMTWK 703
>01_06_0763 +
31800556-31800618,31800659-31800802,31800859-31800980,
31801742-31801807,31801891-31801998,31802226-31802292,
31802716-31802800,31803169-31803329,31803490-31803591,
31803807-31804029,31804155-31804300
Length = 428
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 125 IVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVH 286
+V K LR+L + E+V +E+PE P+K ++ + LR +R H
Sbjct: 353 LVCKEAAMQPLRRLMSVLEARDELVPEEELPEVGPLKPEDIEVALR-NTRPSAH 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,268,213
Number of Sequences: 37544
Number of extensions: 294164
Number of successful extensions: 895
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -