Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H13
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)             218   2e-57
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   28   4.3  
SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)                28   5.7  
SB_11552| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019)               27   7.6  

>SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score =  218 bits (533), Expect = 2e-57
 Identities = 101/160 (63%), Positives = 124/160 (77%)
 Frame = +2

Query: 32  LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 211
           LKE++VIGR +P++    PPLYKMRIF+PD +VA+S+FWYF+ QLK+ KK+ GEIVS ++
Sbjct: 207 LKEFQVIGRLMPNKKLTVPPLYKMRIFAPDDVVARSKFWYFISQLKRMKKSQGEIVSCQQ 266

Query: 212 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 391
           I EK P++IKNFGIWLRY+SRSG HNMYREYRDL+V GAVT CYRDM ARHRAR +SIQI
Sbjct: 267 IYEKKPLQIKNFGIWLRYDSRSGTHNMYREYRDLTVSGAVTACYRDMAARHRARGYSIQI 326

Query: 392 IKVEVIKAAACRRPQVKQFHTSKIGFPLPKRVHQYKRLNT 511
           +KVEVI A+  RRP VKQ H   +  P      Q   L+T
Sbjct: 327 MKVEVIPASKARRPHVKQMHVYGV-LPYFANFRQLAELST 365


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 226 TLFWNFLDGYNFTSSL 179
           T+FW+FLDG N T  L
Sbjct: 603 TMFWDFLDGNNLTQEL 618


>SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)
          Length = 348

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 472 ATKTRSPIQASQYLCIQEAEHVLYV 546
           A KTR P   + + C Q  EHV +V
Sbjct: 227 ANKTRHPFLVNLFACFQTQEHVCFV 251


>SB_11552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 750

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 41  YEVIGRKLPSESEPKPPLYKM 103
           Y+V+  + PS + PK P+YKM
Sbjct: 498 YDVMTERQPSMTTPKEPIYKM 518


>SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019)
          Length = 413

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 255 QIPKFLILTGLFSGISLMDTISPVVFLNFFNCLKKYQKRDFATIGSGEKILILYRG 88
           Q PK+ I   +F+ I ++      + +  F CL +Y+ + +A   S    L++ RG
Sbjct: 290 QTPKYFIFNVIFAIIFVITATFLTILVTIFLCL-RYKPKSYAVDSSKGSPLLVPRG 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,484,697
Number of Sequences: 59808
Number of extensions: 330279
Number of successful extensions: 1192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)