Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H13
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    26   0.29 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    26   0.29 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.50 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.2  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -1

Query: 253 DTKVLNLNRTLFWNFLDGYNFTSSLFELL---QLPQEIPETRFCHN 125
           +TK+++ N   + N+ + YN     + ++   Q+P  +P   +C N
Sbjct: 300 ETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQIPVPVPVPIYCGN 345


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -1

Query: 253 DTKVLNLNRTLFWNFLDGYNFTSSLFELL---QLPQEIPETRFCHN 125
           +TK+++ N   + N+ + YN     + ++   Q+P  +P   +C N
Sbjct: 311 ETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQIPVPVPVPIYCGN 356


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 322 TYTQVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNF 209
           TYT  T+  ++IV      +TQ D ++ N  + + + F
Sbjct: 500 TYTYDTICQLNIVHYGIGFITQSDIELANTFKAIIYGF 537


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 173 FKKTTGEIVSIKEIPEKSPVKI 238
           +KK    I++I++IP   PV I
Sbjct: 349 YKKLYYNIINIEQIPVPVPVPI 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,376
Number of Sequences: 438
Number of extensions: 3066
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)