Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H13
(547 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW 188 2e-48
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB) 188 2e-48
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si... 183 8e-47
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 32 0.22
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote... 30 0.88
At2g35200.1 68415.m04317 expressed protein 30 0.88
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein... 29 1.5
At4g02260.1 68417.m00307 RelA/SpoT protein, putative (RSH1) iden... 28 3.5
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam... 28 3.5
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 28 4.7
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 27 6.2
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 27 8.2
At5g04700.1 68418.m00478 hypothetical protein 27 8.2
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 27 8.2
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 27 8.2
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 27 8.2
At3g43870.1 68416.m04696 hypothetical protein 27 8.2
>At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW
Length = 178
Score = 188 bits (459), Expect = 2e-48
Identities = 84/172 (48%), Positives = 121/172 (70%), Gaps = 3/172 (1%)
Frame = +2
Query: 32 LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 211
L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G++++I E
Sbjct: 6 LHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINE 65
Query: 212 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 391
I EK+P IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQI
Sbjct: 66 IFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQI 125
Query: 392 IKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 538
IK + A+ C+R KQFH SKI FPL R K TF +P+ +
Sbjct: 126 IKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLF 177
>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
Length = 178
Score = 188 bits (458), Expect = 2e-48
Identities = 80/146 (54%), Positives = 111/146 (76%)
Frame = +2
Query: 38 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 217
+Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67
Query: 218 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 397
EK+P IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 398 VEVIKAAACRRPQVKQFHTSKIGFPL 475
+ A C+R KQFH SKI FPL
Sbjct: 128 TATVPAKLCKRESTKQFHNSKIKFPL 153
>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
similar to GB:CAA08791 from [Podocoryne carnea]
Length = 178
Score = 183 bits (445), Expect = 8e-47
Identities = 77/146 (52%), Positives = 109/146 (74%)
Frame = +2
Query: 38 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 217
+Y+V+GR LP+E++ P +Y+M+++ + + AKS+FWYF+R+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIF 67
Query: 218 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 397
EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIK 127
Query: 398 VEVIKAAACRRPQVKQFHTSKIGFPL 475
+ A C+R KQFH SKI FPL
Sbjct: 128 TATVPAKLCKREITKQFHNSKIKFPL 153
>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 867
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 83 KPPLYKMRIFSPDPIVAKSRFWYFL-RQLKKFKKTTGEIVSIKEIPEKSPV 232
+PP++ R +P PI +++RF + Q + +T E +S E P K+ V
Sbjct: 11 RPPIFLHRFINPKPISSQTRFLHPPDNQSRDISDSTTETISTLEFPHKTSV 61
>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 858
Score = 30.3 bits (65), Expect = 0.88
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +2
Query: 164 LKKFKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGVHN-MYREYRD 310
+++F+K E+++ +E+PE + PV + +G W + + G+ + M RE+ D
Sbjct: 679 VEEFEKDKQEVLN-QEVPEPEKPVLVPGWGQWTNVQKKRGLPSWMVREHED 728
>At2g35200.1 68415.m04317 expressed protein
Length = 201
Score = 30.3 bits (65), Expect = 0.88
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 107 IFSPDPIVAKSRFWYFLRQLKKFKKT 184
+FSP P+ +K WYF +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185
>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to GB:AAD22369, NAM stands for No Apicla
Meristem
Length = 425
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +2
Query: 20 AKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 187
AKG ++ + +LPS SEP PP R F D V+ + W R KK TT
Sbjct: 136 AKGVKTDWMMHEFRLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187
>At4g02260.1 68417.m00307 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 884
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 2 HEAKMKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPI 127
++A +K+KG + +Y I ++L +PKP + + SP I
Sbjct: 385 YKAALKSKGSINDYNQIAQQLRIVVKPKPSVGVGPLCSPQQI 426
>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 784
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 234 LTGLFSGISLMDTISPVVFLNFFNCLKKYQK 142
LT LF G++ + T + L F N LKK+ K
Sbjct: 293 LTELFKGLNYLKTYRNLNILAFMNILKKFDK 323
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -1
Query: 247 KVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPETRFCHNRIRRENP 104
K+ + TL DG FT S+ E L L Q + R NR+ + P
Sbjct: 215 KLFSSEMTLLHVLFDGNQFTGSIPESLGLVQNLTVLRLDRNRLSGDIP 262
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.5 bits (58), Expect = 6.2
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Frame = +2
Query: 56 RKLPSESEPKPPLYKMRIF-----SPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPE 220
RK +P+ L+ ++ F S V K+ + F+ + K ++ S+K
Sbjct: 45 RKTFGTGKPETLLHHLKFFARSKESEIEEVCKAHYQDFIHAVDDLKSLLSDVESLKSALS 104
Query: 221 KSPVKIKNFGIWLRYESRSGVH-NMYREYRDLSVGGAVTQCYRDMGARHRARAH 379
S K+++ L S V + DL++G AVT C R M RA H
Sbjct: 105 DSNSKLQSVAAPLLSSLDSLVEAQTVSKNVDLAIG-AVTHCVRVMELVSRANQH 157
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +2
Query: 173 FKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGV-HNMYREYRD 310
F+K E+++ +E+PE + PV++ +G W +++ G+ + RE+ +
Sbjct: 665 FEKDKQEVLN-QEVPEPEKPVQVAGWGHWTNNQNKRGLPSRIVREHEE 711
>At5g04700.1 68418.m00478 hypothetical protein
Length = 669
Score = 27.1 bits (57), Expect = 8.2
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Frame = +2
Query: 188 GEIVS-IKEIPEKSPVKIKNFGIWLRY-ES-------RSGVHNMYREYRDLSVG---GAV 331
G+ VS IKE+PE+ V I + + ES R N+Y EY LS G G V
Sbjct: 34 GDSVSPIKEVPEEEEVPNDPVNIQIPFIESALSTSRLRGKNTNVYYEYIQLSQGISQGRV 93
Query: 332 TQCYRDMGARHRARAHS-IQIIKVEVIKAAACRRPQV 439
+ +D H I + + ++KA AC +P++
Sbjct: 94 -EIVKDFLNHHPDSVDEWINLYETPLLKACACGKPEI 129
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 459 LLVWNCLTCGRRHAAALITSTLMIC 385
L+VWN LT + HA L + +M C
Sbjct: 89 LIVWNALTSQKTHAIKLPCAWVMTC 113
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 459 LLVWNCLTCGRRHAAALITSTLMIC 385
L+VWN LT + HA L + +M C
Sbjct: 27 LIVWNALTSQKTHAIKLPCAWVMTC 51
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 459 LLVWNCLTCGRRHAAALITSTLMIC 385
L+VWN LT + HA L + +M C
Sbjct: 89 LIVWNALTSQKTHAIKLPCAWVMTC 113
>At3g43870.1 68416.m04696 hypothetical protein
Length = 187
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = -2
Query: 165 NCLKKYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMTSYSFNSPFAFILAS 4
+C K+++ D TIG + +G G +R T Y N F+ S
Sbjct: 4 SCFKEFRVADILTIGFKLHPYLTLKGLIEMKRRGLIRDTTGYILNGGITFLTVS 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,400
Number of Sequences: 28952
Number of extensions: 235317
Number of successful extensions: 755
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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