BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_H12 (503 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma... 101 5e-23 SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 31 0.074 SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 28 0.92 SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.2 SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 1.6 SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 26 2.8 SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 26 3.7 SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 3.7 >SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Manual Length = 127 Score = 101 bits (243), Expect = 5e-23 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 1/127 (0%) Frame = +2 Query: 86 MSWQDYVDKQLMASRCVSKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSG 262 MSWQ YVD L+ + + +AAI G+ VWA S GF +S E+ + AGF++ + Sbjct: 1 MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60 Query: 263 GVTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGD 442 G+ +AG +YI + R I KL K G+ C+ T+ +++S Y E P +AA + E L D Sbjct: 61 GIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALAD 120 Query: 443 YLITCGY 463 YL+ GY Sbjct: 121 YLVGVGY 127 >SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces pombe|chr 1|||Manual Length = 469 Score = 31.5 bits (68), Expect = 0.074 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +1 Query: 340 RRALHEDTASRRNFSL*RTHSTPAGRIRSRE 432 +R+LH+ T S L RT+S P +RSRE Sbjct: 426 KRSLHDSTTSHNKSDLMRTNSDPQSAMRSRE 456 >SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 690 Score = 27.9 bits (59), Expect = 0.92 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = -1 Query: 248 VIHSQNRQLSSPLHLLIFRTLLTWPRHFRRDRQLLPLKHI 129 +I+ ++ L SPLHL RT+ ++ RH + ++ L+ I Sbjct: 300 LIYQKDFHLISPLHLTTLRTVPSFQRHIEQRLEIGDLESI 339 >SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 661 Score = 27.5 bits (58), Expect = 1.2 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = -1 Query: 188 LLTW--PRHFRRDRQLLPLKHIWRPL-TVCRHNLASSF*ISSIKNK 60 LLTW F R+R L H+ L T C H LAS+ I NK Sbjct: 354 LLTWLLDNSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLINNK 399 >SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pombe|chr 3|||Manual Length = 534 Score = 27.1 bits (57), Expect = 1.6 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -3 Query: 261 PLVRSDSFSKPATIFATSSFDISNPSDLAQTFPS*PAIAAFETH 130 PLV ++S S P++ +SNPS + PS P + E H Sbjct: 175 PLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSPLGSEDECH 218 >SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr 3|||Manual Length = 577 Score = 26.2 bits (55), Expect = 2.8 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Frame = +2 Query: 92 WQDYVDKQ-----LMASRCVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLT 256 W+D + K+ + C S ++ D NV A + SKD + +++ G E +LT Sbjct: 166 WRDCIKKEPSLFCCLDFSCASPRSVNSRDRNVMAVARYSVYSKDNIQEVI-GLEKLGILT 224 >SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr 1|||Manual Length = 255 Score = 25.8 bits (54), Expect = 3.7 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +1 Query: 274 SGHAVHLPQRYRTYHTRKA 330 SGH + PQ++ +YH KA Sbjct: 150 SGHIANWPQQWASYHATKA 168 >SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 462 Score = 25.8 bits (54), Expect = 3.7 Identities = 21/67 (31%), Positives = 32/67 (47%) Frame = +2 Query: 272 IAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLI 451 ++ RYI SG R I A G G C+K + SL + + ++ V+ GD I Sbjct: 394 VSDVRYIE-SGVNRFI-ATSGYDG--CVKLWNPLNCSLIKSMVGHEEKVMSVDGYGDRFI 449 Query: 452 TCGY*RS 472 + GY R+ Sbjct: 450 SSGYDRT 456 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,962,826 Number of Sequences: 5004 Number of extensions: 37790 Number of successful extensions: 119 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 118 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 200198394 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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