Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H12
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...   101   5e-23
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    31   0.074
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    28   0.92 
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.2  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   1.6  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   2.8  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    26   3.7  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    26   3.7  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score =  101 bits (243), Expect = 5e-23
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
 Frame = +2

Query: 86  MSWQDYVDKQLMASRCVSKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSG 262
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++   +   
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60

Query: 263 GVTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGD 442
           G+ +AG +YI +    R I  KL K G+ C+ T+  +++S Y E   P +AA + E L D
Sbjct: 61  GIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALAD 120

Query: 443 YLITCGY 463
           YL+  GY
Sbjct: 121 YLVGVGY 127


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 31.5 bits (68), Expect = 0.074
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 340 RRALHEDTASRRNFSL*RTHSTPAGRIRSRE 432
           +R+LH+ T S     L RT+S P   +RSRE
Sbjct: 426 KRSLHDSTTSHNKSDLMRTNSDPQSAMRSRE 456


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 248 VIHSQNRQLSSPLHLLIFRTLLTWPRHFRRDRQLLPLKHI 129
           +I+ ++  L SPLHL   RT+ ++ RH  +  ++  L+ I
Sbjct: 300 LIYQKDFHLISPLHLTTLRTVPSFQRHIEQRLEIGDLESI 339


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -1

Query: 188 LLTW--PRHFRRDRQLLPLKHIWRPL-TVCRHNLASSF*ISSIKNK 60
           LLTW     F R+R  L   H+   L T C H LAS+     I NK
Sbjct: 354 LLTWLLDNSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLINNK 399


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 261 PLVRSDSFSKPATIFATSSFDISNPSDLAQTFPS*PAIAAFETH 130
           PLV ++S S P++        +SNPS  +   PS P  +  E H
Sbjct: 175 PLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSPLGSEDECH 218


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +2

Query: 92  WQDYVDKQ-----LMASRCVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLT 256
           W+D + K+      +   C S  ++   D NV A +     SKD + +++ G E   +LT
Sbjct: 166 WRDCIKKEPSLFCCLDFSCASPRSVNSRDRNVMAVARYSVYSKDNIQEVI-GLEKLGILT 224


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 274 SGHAVHLPQRYRTYHTRKA 330
           SGH  + PQ++ +YH  KA
Sbjct: 150 SGHIANWPQQWASYHATKA 168


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 272 IAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLI 451
           ++  RYI  SG  R I A  G  G  C+K    +  SL +  +  ++    V+  GD  I
Sbjct: 394 VSDVRYIE-SGVNRFI-ATSGYDG--CVKLWNPLNCSLIKSMVGHEEKVMSVDGYGDRFI 449

Query: 452 TCGY*RS 472
           + GY R+
Sbjct: 450 SSGYDRT 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,826
Number of Sequences: 5004
Number of extensions: 37790
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)