Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H12
(503 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39) 55 3e-08
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8) 32 0.23
SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09) 29 2.2
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12) 29 2.9
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 28 3.8
SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0) 27 8.8
>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 60.1 bits (139), Expect = 1e-09
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Frame = +2
Query: 134 VSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTE- 310
V +AAI G DG+ WA S GF +S+ E +++ ++ S+ TI G +Y+ L +
Sbjct: 7 VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV---SAKTIGGAKYMMLRNDQE 63
Query: 311 -RIIRAKLGKVGVHCM-KTQQAVVISLYEEPI-QPQQAASVVEKLGDYLITCGY 463
+I KL G C+ T+QA+VI YEE +VVE+L YL GY
Sbjct: 64 SKICYLKLKDKGGFCVCLTKQALVIGGYEESAGGAGNCNNVVEQLAQYLKESGY 117
>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
Length = 571
Score = 55.2 bits (127), Expect = 3e-08
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Frame = +2
Query: 104 VDKQLMASRCVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTS-GGVTIAG 280
VD+ L+ + V+KA+I G +G +A S GF + E ++A + T GV +
Sbjct: 450 VDESLLGTSQVAKASIHGLNGERYASSSGFVVLPSEAQVLIAAITKDPSPTYYKGVCLNR 509
Query: 281 TRYIYLS-GTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLITC 457
T+Y + + + G G + T Q ++I Y E + P ++V EKL DY
Sbjct: 510 TKYFVIRVDPGHSLYCRKGNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVN 569
Query: 458 GY 463
G+
Sbjct: 570 GF 571
>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
Length = 404
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/76 (21%), Positives = 33/76 (43%)
Frame = +2
Query: 212 VAKIVAGFENESLLTSGGVTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYE 391
++ +V F + + G+ Y + + + K K G+ +KT ++++LY
Sbjct: 1 MSSLVGAFGDSARTRMEGLKFEDVLYECVRADKFSVYGKHDKTGIVAIKTATLILVALYS 60
Query: 392 EPIQPQQAASVVEKLG 439
+ + P EKLG
Sbjct: 61 QEMSPSICVEASEKLG 76
>SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)
Length = 355
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 107 DKQLMASRCVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 283
D LMA + A+A G+ W+ G I K +++ + T+GGVTI GT
Sbjct: 174 DASLMAMAVLG--ALACSCGDTWSSEIGTAI-KSHTPRLITTLRKVPVGTNGGVTIPGT 229
>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
Length = 697
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 158 HDGNVWAKSEGF-EISKDEVAKIV-AGFENESLLTSGGVTIAGTRYIYLSG 304
H G W ++G EI D + ++ GF L +GG + G Y L+G
Sbjct: 380 HYGITWRSNDGHVEIHADGILRLSQTGFATGHTLPAGGTMVLGQSYRVLNG 430
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 76 LIQNELARLCRQTVNGLQMCFKGSNCRSRR 165
L +NEL RL T++G CF S S+R
Sbjct: 96 LFKNELKRLSSLTIDGHSQCFFSSEYNSQR 125
>SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 98 DYVDKQLMASRCVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTI 274
D++ +Q+ S C+ A+A G K F + D ++V + ++L TS + I
Sbjct: 249 DFIMRQIETSNCLRILALAERHGLKILKEAAFSVIMDNFTEVVETDDFKNLSTSQVIDI 307
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 383 EKLRRLAVSSCNARRPCRALRV*YVLY 303
E +R+ + S CN R PC+AL ++L+
Sbjct: 106 ENMRKNSNSYCNCRNPCQALFDGFILF 132
>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
Length = 1325
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 355 HA-MHADLAELCAYDTFCTAEVDVPRARYRNTAA 257
HA +H D C YD++ T R R+ NT A
Sbjct: 752 HAYLHHDTRTTCKYDSYSTRIYTTTRVRHVNTTA 785
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,205,195
Number of Sequences: 59808
Number of extensions: 307781
Number of successful extensions: 647
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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