Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H12
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protei...    93   1e-19
AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3 pr...    93   1e-19
AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1 pr...    73   2e-13
AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical...    73   2e-13
U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    69   2e-12
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    69   2e-12
AF067613-13|ABA54415.1|  443|Caenorhabditis elegans Hypothetical...    32   0.27 
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   4.4  
AC024787-1|AAF60607.2|  469|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protein 3
           protein.
          Length = 126

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 48/126 (38%), Positives = 67/126 (53%)
 Frame = +2

Query: 86  MSWQDYVDKQLMASRCVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 265
           MSW D ++  L+ S  VSKAAI G DG VWAKS+ F IS +E       F +   L   G
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60

Query: 266 VTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDY 445
           + + G +++ L+     I  K G  G    KT QAV+IS+YE+ +QP+  +     L DY
Sbjct: 61  LRLEGQKFLVLNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADY 120

Query: 446 LITCGY 463
             +  Y
Sbjct: 121 FRSIKY 126


>AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3
           protein.
          Length = 126

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 48/126 (38%), Positives = 67/126 (53%)
 Frame = +2

Query: 86  MSWQDYVDKQLMASRCVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 265
           MSW D ++  L+ S  VSKAAI G DG VWAKS+ F IS +E       F +   L   G
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60

Query: 266 VTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDY 445
           + + G +++ L+     I  K G  G    KT QAV+IS+YE+ +QP+  +     L DY
Sbjct: 61  LRLEGQKFLVLNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADY 120

Query: 446 LITCGY 463
             +  Y
Sbjct: 121 FRSIKY 126


>AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1
           protein.
          Length = 132

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
 Frame = +2

Query: 92  WQDYVDKQLMASRCVSKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTS 259
           W  Y+D    A+  + + AI G  DG+VWA++E    F+ S++E+   VA F + + + +
Sbjct: 4   WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPA 63

Query: 260 GGVTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQ-PQQAASVVEKL 436
            G  I G  Y+     E +I  K    G   +KT+ AV+I++YE P +   Q    VE +
Sbjct: 64  KGADIEGVHYVVPRTEESLIFGKKENTGFFAVKTKSAVLIAVYEGPNEVAAQVRKAVESM 123

Query: 437 GDYLITCGY 463
             YL   GY
Sbjct: 124 QTYLNNAGY 132


>AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical
           protein Y18D10A.20 protein.
          Length = 132

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
 Frame = +2

Query: 92  WQDYVDKQLMASRCVSKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTS 259
           W  Y+D    A+  + + AI G  DG+VWA++E    F+ S++E+   VA F + + + +
Sbjct: 4   WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPA 63

Query: 260 GGVTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQ-PQQAASVVEKL 436
            G  I G  Y+     E +I  K    G   +KT+ AV+I++YE P +   Q    VE +
Sbjct: 64  KGADIEGVHYVVPRTEESLIFGKKENTGFFAVKTKSAVLIAVYEGPNEVAAQVRKAVESM 123

Query: 437 GDYLITCGY 463
             YL   GY
Sbjct: 124 QTYLNNAGY 132


>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
 Frame = +2

Query: 92  WQDYVDKQLMASRCVSKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSG 262
           W DY+      S  + +AAI G DG+VWA+S     F  ++ E+ +  A F + + +   
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGT 63

Query: 263 GVTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLG 439
           G  +    YI     E++I  K  + G    KT QA+VI++YE +  Q     + VE + 
Sbjct: 64  GADLEEIHYIVPRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIA 123

Query: 440 DYLITCGY 463
            YL + GY
Sbjct: 124 QYLASSGY 131


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
 Frame = +2

Query: 92  WQDYVDKQLMASRCVSKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSG 262
           W DY+      S  + +AAI G DG+VWA+S     F  ++ E+ +  A F + + +   
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGT 63

Query: 263 GVTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLG 439
           G  +    YI     E++I  K  + G    KT QA+VI++YE +  Q     + VE + 
Sbjct: 64  GADLEEIHYIVPRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIA 123

Query: 440 DYLITCGY 463
            YL + GY
Sbjct: 124 QYLASSGY 131


>AF067613-13|ABA54415.1|  443|Caenorhabditis elegans Hypothetical
           protein F56D6.1 protein.
          Length = 443

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 279 PAIVTPPLVRSDSFSKPATIFATSSFDISNPSDL 178
           P++VT  L+ S   S+P T FA S FD+  P D+
Sbjct: 180 PSVVTDTLINSYLSSQPVT-FAVSRFDLRQPEDI 212


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 40   CV*SSVVLFLIELIQNELARLCRQTVNGL-QMCFKGSNCRSRRKCLGQV 183
            CV S      I  +  +L R   + +  L + CF+ S+C S+R+CL  V
Sbjct: 1235 CVVSPREKRFISDVHRKLLRFTPKKLAKLGEYCFRNSHCESQRQCLKNV 1283


>AC024787-1|AAF60607.2|  469|Caenorhabditis elegans Hypothetical
           protein Y46C8AR.1 protein.
          Length = 469

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 279 PAIVTPPLVRSDSFSKPATIFATSSFDISNPSDL 178
           P++VT  L  S S S  +  +A S FD+  P D+
Sbjct: 193 PSVVTDALYYS-SLSSQSVTYAVSRFDLRQPEDI 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,093,719
Number of Sequences: 27780
Number of extensions: 221648
Number of successful extensions: 532
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)