Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H11
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552 30 0.56
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 29 1.3
07_03_0106 - 13460882-13462086,13463452-13463629 28 2.3
01_06_0373 - 28841462-28842850 28 2.3
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589... 27 3.0
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 3.9
06_03_0400 - 20420257-20421837 27 5.2
02_01_0243 - 1601977-1602834,1602857-1603063 27 5.2
01_06_0034 + 25769436-25769701,25769749-25769887 27 5.2
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 26 6.9
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619... 26 9.1
>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
Length = 471
Score = 29.9 bits (64), Expect = 0.56
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 2 HEGETTL*SDSSATSGRRYAFPVDSRC 82
H G ++ SDSS TS R +AFPV C
Sbjct: 411 HIGNISIRSDSSTTSTRSFAFPVWEVC 437
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 2 HEGETTL*SDSSATSGRRYAFPV 70
+ G +L SDSS TS R +AFPV
Sbjct: 606 YSGNISLRSDSSTTSTRSFAFPV 628
>07_03_0106 - 13460882-13462086,13463452-13463629
Length = 460
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 165 HQLWVVQSPPADRAVRLSREPLEPGPPIQR 76
H+L V+ PA R R + PL P P R
Sbjct: 127 HRLRVIDGDPAPRLARTTAAPLSPDPAFLR 156
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 159 LWVVQSPPADRAVRLSREPLEP 94
LWVV+SPP+D + +P EP
Sbjct: 286 LWVVRSPPSDDPAKKFDKPPEP 307
>01_05_0416 +
21956050-21956512,21958001-21958065,21958772-21958933,
21959006-21959107
Length = 263
Score = 27.5 bits (58), Expect = 3.0
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = -1
Query: 270 RELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPG 91
++L L +R + HRS+ ++ G S + L +SP R SR P
Sbjct: 2 QQLRLRLNTKAQHRRGKTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQ 61
Query: 90 PPIQRESTGNAYRRP 46
PP ++ST + RRP
Sbjct: 62 PP--KDSTARSGRRP 74
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -1
Query: 141 PPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVAEESDYNVVSP 7
PP+D R EP P PP +G AY PL + D P
Sbjct: 316 PPSDYVRRRLLEPPRPPPPAAVNPSGKAY-TPLEQQVVDLKARHP 359
>06_03_0400 - 20420257-20421837
Length = 526
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 201 PSRRGMKSGIEYHQLWVVQSPPADRAVRLSRE 106
P R+GM I+Y W + PA+ ++ R+
Sbjct: 414 PHRKGMLYNIQYITFWFGEGAPAEAPIKWIRD 445
>02_01_0243 - 1601977-1602834,1602857-1603063
Length = 354
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = -1
Query: 186 MKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVAEESDYNVVSP 7
MKS Y +W+ + + VRL R L PG E + Y + ++ + V
Sbjct: 249 MKSTEPYMDVWIAAAAGGENWVRLLRVELPPGHYYSGEVKPHGYGKAVLDDAGVLLVAMN 308
Query: 6 SC 1
C
Sbjct: 309 GC 310
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 120 RLSREPLEPGPPIQRESTGNAYRRPLV-AEESDYNV 16
RL EPL P P Q E G A +R EE D +
Sbjct: 64 RLDAEPLSPPPSRQHEHQGEASQRQRARIEEEDRQI 99
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 144 SPPADRAVRLSREPLEPGPPIQRESTGN 61
SPP R S EP + PP++R++ G+
Sbjct: 295 SPPRRRTRHDSHEPKDKLPPLKRQALGD 322
>02_02_0543 +
11360514-11361350,11361434-11361559,11361648-11361976,
11362078-11362861
Length = 691
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 141 PPADRAVRLSREPLEPGPPIQ---RESTGNAYRRPLVAEESDYNVV 13
PP A+ + ++P P PP Q + T +A+ R L AE ++ + V
Sbjct: 27 PPLPPAIIIHKDPPPPPPPRQPAAAKGTLDAFGRDLTAEAANADPV 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,587,393
Number of Sequences: 37544
Number of extensions: 148085
Number of successful extensions: 418
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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