Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H11
         (345 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51856| Best HMM Match : DUF593 (HMM E-Value=3.3)                    33   0.062
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  28   2.3  
SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)                   27   5.4  
SB_14691| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       26   9.4  
SB_29537| Best HMM Match : Ribosomal_L3 (HMM E-Value=0.61)             26   9.4  
SB_8790| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.4  
SB_5459| Best HMM Match : DUF1138 (HMM E-Value=9.3)                    26   9.4  

>SB_51856| Best HMM Match : DUF593 (HMM E-Value=3.3)
          Length = 314

 Score = 33.1 bits (72), Expect = 0.062
 Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 14/86 (16%)
 Frame = -1

Query: 222 RLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSR-----EPL-------EPGPPIQ 79
           R  RS  PSR G+     Y +  +   PP D  V   R     EP        EP PPI 
Sbjct: 207 RPRRSSSPSRPGLGIAKSYPRSGIRDGPPPDEYVEFLRSGVRPEPQVVVRAAPEPLPPIS 266

Query: 78  RESTGNAYR--RPLVAEESDYNVVSP 7
               G +YR   P  +EE    +VSP
Sbjct: 267 SNELGTSYRGKTPRHSEEVSKIIVSP 292


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 18/82 (21%), Positives = 30/82 (36%)
 Frame = -1

Query: 279  PIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPL 100
            P+YR   + L  +          S  P +   + G +   +    SP A      ++EP 
Sbjct: 1548 PVYRAYQENLSSSEKENSLSSEHSYSPGKHQRRQGHKERIIASQNSPAAKIRTSHNKEPN 1607

Query: 99   EPGPPIQRESTGNAYRRPLVAE 34
            + GP      +   Y RP  +E
Sbjct: 1608 DSGPAWFYPVSNKHYSRPSDSE 1629


>SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 148 YNPQLMILYS*LHSTTGRTLTPVETTTTIRIILLKNLS*FPIYWPCS 288
           Y P L+ILY  L +  GR     +T   + + L  +    P+ W  S
Sbjct: 505 YEPTLLILYEPLKTWAGRLAMRNDTCALVAVSLNMSQKAHPVVWQLS 551


>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 276 IYRELAQVLQQNNSNRCCRLHRS 208
           I +++  +L+QN S RC RLH S
Sbjct: 831 IIQKILTILKQNTSLRCLRLHSS 853


>SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)
          Length = 514

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 150 VQSPPADRAVRLSREP 103
           ++SPP DR VRL R P
Sbjct: 144 IKSPPGDRRVRLMRHP 159


>SB_14691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 168 YHQLWVVQSPPADRAVRLSREPLEPGPPI 82
           YH   +  SP A   +R S+EP+E G P+
Sbjct: 237 YHSYGLGYSPYAYAPLRASQEPVESGLPL 265


>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -1

Query: 282 RPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQL 157
           RP+Y +         S  C   +R  CPS   +K  + Y +L
Sbjct: 376 RPLYTDNTANGMSERSLSCRAWYREHCPSGHPVKVRVSYQKL 417


>SB_29537| Best HMM Match : Ribosomal_L3 (HMM E-Value=0.61)
          Length = 261

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 155 GLYSLRQLIGLFVCHGSRSSQGHQYNESQREMHIAGRLSPRSQT 24
           G  S   L+G  + H SR+ +    N      ++AGR+S R  T
Sbjct: 212 GRMSRVYLVGQMIGHMSRAHRVKPMNGRMSRAYLAGRMSGRMST 255


>SB_8790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 291 LYLKPTFQSINDLP 332
           LY+KPTFQ + +LP
Sbjct: 51  LYIKPTFQCLENLP 64


>SB_5459| Best HMM Match : DUF1138 (HMM E-Value=9.3)
          Length = 270

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 276 IYRELAQVLQQNNSNRCCRLHRSQC 202
           I + + Q L  N+ NRC  L RS+C
Sbjct: 167 IQQYVCQRLNVNDCNRCSALRRSKC 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,684,867
Number of Sequences: 59808
Number of extensions: 164500
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)