Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H11
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68010-1|CAD44146.1|   92|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    26   6.3  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    26   8.3  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        26   8.3  

>Z68010-1|CAD44146.1|   92|Caenorhabditis elegans Hypothetical
           protein T01C1.4 protein.
          Length = 92

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 312 EM*ASGRARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIE 169
           +M A+ R + RP+   +A V +Q N N+C    +    S  G+  GI+
Sbjct: 41  DMPATIRTQDRPVVLYMAPVHKQENENKCV-CGKDGDSSASGISKGIQ 87


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
           protein C35C5.6 protein.
          Length = 1224

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 147 QSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVAEESDY-NVVSPSC 1
           Q  PAD++ R SRE  +     + E   NAY +     +SDY N++   C
Sbjct: 88  QGEPADKSTRASRESTD-SEVSESEQISNAYNK----LKSDYSNIICSRC 132


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -1

Query: 168  YHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVAEESDYN 19
            +H   +V   P D+++ +    ++P P + RE      RR  ++E+   N
Sbjct: 905  FHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSEDVSVN 954


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -1

Query: 168 YHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVAEESDYN 19
           +H   +V   P D+++ +    ++P P + RE      RR  ++E+   N
Sbjct: 780 FHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSEDVSVN 829


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,991,383
Number of Sequences: 27780
Number of extensions: 118023
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)