Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H11
         (345 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi...    29   0.63 
At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein gar2...    29   0.83 
At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein gar2...    29   0.83 
At2g46300.1 68415.m05759 expressed protein                             27   3.4  
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi...    27   4.4  
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote...    26   5.9  
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea...    26   5.9  
At5g59800.1 68418.m07497 methyl-CpG-binding domain-containing pr...    26   7.7  

>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile: PF00515 TPR Domain (5
           copies)
          Length = 1064

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -1

Query: 237 SNRCCRLHRSQCPSRRGMKSGIE 169
           ++RCC ++ S+C ++ G+KS +E
Sbjct: 716 ASRCCIINVSECANKEGLKSALE 738


>At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein
           gar2-related contains weak similarity to
           Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
           pombe]
          Length = 439

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 2   HEGETTL*SDSSATSGRRYAFPV 70
           + G  ++ SD+S TSGR +AFP+
Sbjct: 383 YSGSLSVRSDASTTSGRSFAFPI 405


>At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein
           gar2-related contains weak similarity to
           Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
           pombe]
          Length = 439

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 2   HEGETTL*SDSSATSGRRYAFPV 70
           + G  ++ SD+S TSGR +AFP+
Sbjct: 383 YSGSLSVRSDASTTSGRSFAFPI 405


>At2g46300.1 68415.m05759 expressed protein
          Length = 252

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 171 EYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRP 46
           +Y    V+Q PP  R   +S  P  P PPIQ++    A   P
Sbjct: 3   DYQMNPVLQKPPGYRDPNMSSPP-PPPPPIQQQPMRKAVPMP 43


>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
           histidine kinase AHK2 [Arabidopsis thaliana]
           gi|13537196|dbj|BAB40774
          Length = 1176

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 134 LIGLFVCHGSRSSQGHQYNESQREMHIAGRLSPRSQ 27
           ++G+ VCH    S      E + ++H+   L+P+ Q
Sbjct: 181 ILGVLVCHKIYVSHSKARGERKEKVHLQEALAPKKQ 216


>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor protein
           kinase-like protein GI:10177178 from [Arabidopsis
           thaliana]
          Length = 1045

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 300 SGRARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIE 169
           SG   + P ++ ++      N+N C  L    C S  G  +G++
Sbjct: 638 SGPIPSTPFFKTISTTSYLQNTNLCHSLDGITCSSHTGQNNGVK 681


>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
           family protein similar to Sec31p (GI:13928450)  {Oryza
           sativa}
          Length = 969

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 123 VRLSREPLEPGPPIQRESTGN--AYRRPLVA 37
           V +  EP+ P P +Q   T N  A+++P+VA
Sbjct: 835 VAVQPEPVAPPPTVQTADTSNVPAHQKPIVA 865


>At5g59800.1 68418.m07497 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 306

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = -1

Query: 198 SRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLVAE 34
           +RRG          W+V+  P   +  + R  +EPG       TGN +R     E
Sbjct: 172 NRRGHSKDFRLPDGWIVEEKPRRSSSHIDRSYIEPG-------TGNKFRSMAAVE 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,586,770
Number of Sequences: 28952
Number of extensions: 111741
Number of successful extensions: 250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)