Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H10
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 266 1e-72
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 144 4e-36
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 128 3e-31
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 103 2e-23
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 83 1e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 81 1e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 69 4e-13
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 34 0.009
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.083
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 31 0.083
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.19
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 28 0.77
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 2.3
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 5.4
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.2
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 7.2
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 24 9.5
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 24 9.5
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 24 9.5
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 24 9.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 9.5
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 266 bits (652), Expect = 1e-72
Identities = 116/129 (89%), Positives = 126/129 (97%)
Frame = +2
Query: 65 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 244
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 245 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 424
RGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 425 IMFETFNSP 451
I+FETFN+P
Sbjct: 122 IIFETFNAP 130
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 144 bits (350), Expect = 4e-36
Identities = 66/128 (51%), Positives = 88/128 (68%), Gaps = 1/128 (0%)
Frame = +2
Query: 71 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 250
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 251 ILTLKYPIEHGIITNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQI 427
+L ++ PIE GII NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ +
Sbjct: 68 LLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEY 127
Query: 428 MFETFNSP 451
+ET N P
Sbjct: 128 FYETLNVP 135
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 128 bits (310), Expect = 3e-31
Identities = 59/124 (47%), Positives = 87/124 (70%), Gaps = 2/124 (1%)
Frame = +2
Query: 77 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 250
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 251 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 430
+L +KYP+E+GII ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + M
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123
Query: 431 FETF 442
FE +
Sbjct: 124 FERY 127
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 103 bits (246), Expect = 2e-23
Identities = 58/145 (40%), Positives = 78/145 (53%), Gaps = 24/145 (16%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 211
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 212 ------DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 370
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 371 LLTEAPLNPKANREKMTQIMFETFN 445
LLTE PLNP NRE +IMFE+FN
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFN 151
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 83.4 bits (197), Expect = 1e-17
Identities = 43/124 (34%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 262
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 263 -KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 439
+ P E +I+NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 440 FNSP 451
+N+P
Sbjct: 142 YNAP 145
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 80.6 bits (190), Expect = 1e-16
Identities = 44/128 (34%), Positives = 68/128 (53%)
Frame = +2
Query: 68 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 247
D+V+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 248 GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 427
G + +K I +G + NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 428 MFETFNSP 451
MFE+ P
Sbjct: 121 MFESLRCP 128
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 68.5 bits (160), Expect = 4e-13
Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 68 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 247
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 248 GI--LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 421
I + +K +GII +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 422 QIMFETFNSP 451
+ FE + P
Sbjct: 122 EAAFEQLHVP 131
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 34.3 bits (75), Expect = 0.009
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 262
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 263 KYPIEH--GIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 430
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 431 FETF 442
FE F
Sbjct: 118 FEEF 121
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.083
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 128 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 271
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 31.1 bits (67), Expect = 0.083
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +2
Query: 269 PIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 436
PI+ G + +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 437 TFNSP 451
P
Sbjct: 172 ECQVP 176
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.19
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 329 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSP 451
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 27.9 bits (59), Expect = 0.77
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +3
Query: 15 RVNIHRVPTQKHTPKCATTMLLRS*LTMAPACAKPVSPV----TTRLAPSSRPSWVALAT 182
RVN+ P K PKC + LT++ + P++P+ T +L S P +
Sbjct: 11 RVNVFLDPETKDIPKCVADLKFPLPLTLSR--STPINPIIRSDTIQLVISCPPVTYSDEI 68
Query: 183 RVSWSAWD 206
+V W A D
Sbjct: 69 QVPWKAID 76
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 371 LLTEAPLNPKANREKMTQIMFETFN 445
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 188 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 274
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 7.2
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 95 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 247
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.6 bits (51), Expect = 7.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 232 LITDVRVLLSHADHDTLVARATHDGREDGARRVVTG 125
++TD R+LL + H T DG DGA V+TG
Sbjct: 85 IVTDARLLLCNMTHRGATGADTRDG--DGA-GVMTG 117
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 9.5
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 324 WCQIFS-MSSQLVMIPCSMGYFRVRIPLLL-WASSPT*ESFCPMPTMTPWW 178
WC+ S + SQ+ + +G F PL L WA S P +TPWW
Sbjct: 304 WCKPSSAVLSQIFGVKTGLGLF----PLTLDWAQI----SSLSNPLITPWW 346
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 69 TMLLRS*LTMAPACAKPVSPVTTRLAPSSRPSWVALATRVSWSAW 203
T+LL+S L +C+K T+ A S+ W+A + AW
Sbjct: 99 TILLKSCLGKYMSCSKSGDLYCTQEAVGSQEQWIAENLGSGFWAW 143
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.2 bits (50), Expect = 9.5
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 284 IITNWDDME-KIWH--HTFYNELRVAPEEHPVLLTEAPLNP 397
+I + DD +W+ HTF+++ + P EH + ++++ +NP
Sbjct: 271 VIGSADDRTLNVWNLRHTFHHKGKTRPPEHRI-VSQSIINP 310
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 24.2 bits (50), Expect = 9.5
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +2
Query: 266 YPIEHGIITNWDDMEKIWHHTFYNELRVAPE 358
YP G++ +W ++E + E+R+ P+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 9.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 171 RPTMDGKTARGASSPAKPALHMPEPL 94
RP+ DG+ A G A P++ P P+
Sbjct: 950 RPSNDGRKASGPRPAAPPSIPPPLPV 975
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 9.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 233 PHHRRKSPSVP 201
PHHR +SPS P
Sbjct: 125 PHHRERSPSPP 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,584
Number of Sequences: 5004
Number of extensions: 34963
Number of successful extensions: 106
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -