Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H10
(453 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 288 2e-78
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 283 4e-77
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 281 3e-76
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 281 3e-76
SB_56| Best HMM Match : Actin (HMM E-Value=0) 279 8e-76
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 1e-47
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 6e-29
SB_54| Best HMM Match : Actin (HMM E-Value=0) 70 8e-13
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 59 1e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 58 4e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 1e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 55 2e-08
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 55 3e-08
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 2e-06
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) 29 1.4
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 27 5.5
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 7.3
SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19) 27 9.6
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 288 bits (706), Expect = 2e-78
Identities = 130/131 (99%), Positives = 131/131 (100%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNSP 451
TQIMFETFNSP
Sbjct: 121 TQIMFETFNSP 131
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 283 bits (695), Expect = 4e-77
Identities = 127/131 (96%), Positives = 130/131 (99%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
M DDD+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNSP 451
TQIMFETFNSP
Sbjct: 121 TQIMFETFNSP 131
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 281 bits (688), Expect = 3e-76
Identities = 127/131 (96%), Positives = 130/131 (99%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
M DD++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNSP 451
TQIMFETFNSP
Sbjct: 121 TQIMFETFNSP 131
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 281 bits (688), Expect = 3e-76
Identities = 127/129 (98%), Positives = 129/129 (100%)
Frame = +2
Query: 65 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 244
+DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 245 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 424
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 425 IMFETFNSP 451
IMFETFNSP
Sbjct: 122 IMFETFNSP 130
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 279 bits (684), Expect = 8e-76
Identities = 126/129 (97%), Positives = 129/129 (100%)
Frame = +2
Query: 65 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 244
+D+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 245 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 424
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 425 IMFETFNSP 451
IMFETFNSP
Sbjct: 122 IMFETFNSP 130
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 186 bits (452), Expect = 1e-47
Identities = 84/89 (94%), Positives = 86/89 (96%)
Frame = +2
Query: 65 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 244
DDDVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 245 RGILTLKYPIEHGIITNWDDMEKIWHHTF 331
RGILTLKYPIEHGI+TNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 404 NREKMTQIMFETFNSP 451
N + M +IMFETFNSP
Sbjct: 78 NWDDMEKIMFETFNSP 93
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 123 bits (297), Expect = 6e-29
Identities = 57/125 (45%), Positives = 82/125 (65%), Gaps = 3/125 (2%)
Frame = +2
Query: 77 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 250
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 251 ILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 427
+L + YP+++GI+ NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 428 MFETF 442
MFE +
Sbjct: 127 MFENY 131
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 70.1 bits (164), Expect = 8e-13
Identities = 31/47 (65%), Positives = 38/47 (80%)
Frame = +2
Query: 311 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 451
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVP 2175
Score = 61.7 bits (143), Expect = 3e-10
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +2
Query: 41 TKTHAKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 184
TK A + +V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2083 TKQQAAFEQNGGTVVVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.3 bits (137), Expect = 1e-09
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 184
LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 57.6 bits (133), Expect = 4e-09
Identities = 24/61 (39%), Positives = 39/61 (63%)
Frame = +2
Query: 269 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 448
PI+ G+I +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 449 P 451
P
Sbjct: 63 P 63
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.0 bits (129), Expect = 1e-08
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +2
Query: 197 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 376
G+ D ++GDEA K T K+PI H I+ +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 55.2 bits (127), Expect = 2e-08
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Frame = +2
Query: 80 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYVGDEAQSKRG 250
A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD GD A +K G
Sbjct: 702 AIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKYGDAAVAKSG 761
Query: 251 ILTL 262
++ L
Sbjct: 762 VMHL 765
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 54.8 bits (126), Expect = 3e-08
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +2
Query: 359 EHPVLLTEAPLNPKANREKMTQIMFETFNSP 451
+HPVLLTEAPLNP+ NREK ++ FETFN P
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVP 156
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +2
Query: 74 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 253
+A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKDY 284
Query: 254 LTLKY--PIEHGIITNWDDMEKIWHHTFYNE 340
L Y P + G + NWD ++IW +TF E
Sbjct: 285 SALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = -3
Query: 181 VARATHDGREDGARRVVTGETGFAHAGAIVNYERSNIVV-AHF 56
+AR+ DG E+G+ +V+GETG AH GAI++ + +I+V HF
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIVLVHF 43
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.1 bits (67), Expect = 0.45
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 260 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 412
L+ P + ++T+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 709
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 184 GCHGRHGTEGLLRR**GPEQERYPHPEVPHRTRYHH 291
G HGR GTEG L R PEQ + TR+ H
Sbjct: 137 GIHGREGTEGKLNRNRKPEQGTGKRNMMLAETRHTH 172
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 60 CATTMLLRS*LTM-APACAKPVSPVTTRLAPSSR 158
C T+L+R T+ APA KP+SP T P +R
Sbjct: 634 CLATLLVRPLETIPAPAPTKPISPATPASGPPTR 667
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 186 PWWRGRPTMDGKTARGASSPAKPALHMPEP 97
P W + G T R PAKP+L++P P
Sbjct: 530 PKWLQQVKDGGNTNRRTRIPAKPSLNLPSP 559
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +3
Query: 93 TMAPACAKPVSPVTTRLAPS----SRPSWVALATRVSWSAWDRRTLTSVMRP 236
+MA + P + APS + PSW A+ + WD T TS +P
Sbjct: 578 SMASVDSTDNKPTDNKPAPSGWGEAGPSWAVQASVTGTACWDTATTTSPKKP 629
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 53 AKMCDDDVAALVVDNG-SGMCKAGFAGD 133
+++CD D + +N MCKAG+ GD
Sbjct: 486 SRLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 180 WRGRPTMDGKTARGASSPAKPALHMPEP 97
W + G T R PAKPAL++P P
Sbjct: 72 WLQQVKDGGNTNRRTRIPAKPALNLPSP 99
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 156 GKTARGASSPAKPALHMPEP 97
G T R PAKPAL++P P
Sbjct: 80 GNTNRRTRIPAKPALNLPSP 99
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 77 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 181
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
Length = 309
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 235 PEQERYPHPEVPHRTRYHH 291
P + YPHP P R Y H
Sbjct: 209 PRRPEYPHPYPPRRPEYAH 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,185
Number of Sequences: 59808
Number of extensions: 317693
Number of successful extensions: 1088
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -