Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H09
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              247   6e-66
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.011
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)                29   2.8  
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)                     29   2.8  
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)                   29   3.7  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   3.7  
SB_23459| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0.17)           28   4.9  
SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     28   4.9  
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)                 28   6.4  
SB_48293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)                 28   6.4  
SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)                  28   6.4  
SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)              27   8.5  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  247 bits (604), Expect = 6e-66
 Identities = 114/151 (75%), Positives = 129/151 (85%)
 Frame = +2

Query: 134 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 313
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 314 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVR 493
           KSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNL KEDDVR
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121

Query: 494 RYVVKRLLPAKEGKENAKPRYNAPKIQRLVT 586
           +YV++R LP KEGK   K +  APKIQRLVT
Sbjct: 122 QYVIRRPLPEKEGK---KAKSKAPKIQRLVT 149


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 280 ARVAF*HQETYTAVSQDSLFHREALLVVTAGNTENITFPFVA*KICINFSAHTLFIE 110
           A V    QE   A+  D L H ++L V+T  + E+++ P +   +      HTL IE
Sbjct: 250 AAVTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
          Length = 848

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 237 LTAVYVS*CQKATLATDHVVTVRGNASLFVVALLML 344
           L+++  + C KATLA D+V++ +GN+   ++  L+L
Sbjct: 472 LSSMLSNGCTKATLACDNVISEKGNSFQRILGSLIL 507


>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1101

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 392 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPR 553
           +  + D E P  L    A  ++ + +    DDV+  ++K L+P KEG E+  P+
Sbjct: 9   LDSMRDKEAPAVL----AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58


>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
          Length = 759

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 478 RRRCASLCCKTPFTCQRGQGKCKTQIQC 561
           R R     C T   C+ G+G C T+I+C
Sbjct: 526 RGRSGEGTCVTSIRCRSGEGTCVTRIRC 553



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 478 RRRCASLCCKTPFTCQRGQGKCKTQIQC 561
           R R     C T   C+ G+G C T I+C
Sbjct: 552 RCRSGEGTCVTSIRCRSGEGTCVTSIRC 579



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 478 RRRCASLCCKTPFTCQRGQGKCKTQIQC 561
           R R     C T   C+ G+G C T I+C
Sbjct: 565 RCRSGEGTCVTSIRCRSGEGTCVTSIRC 592



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 478 RRRCASLCCKTPFTCQRGQGKCKTQIQC 561
           R R     C T   C+ G+G C T I+C
Sbjct: 578 RCRSGEGTCVTSIRCRSGEGTCVTSIRC 605



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 478 RRRCASLCCKTPFTCQRGQGKCKTQIQC 561
           R R     C T   C+ G+G C T I+C
Sbjct: 539 RCRSGEGTCVTRIRCRSGEGTCVTSIRC 566


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 320 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 460
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_23459| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0.17)
          Length = 797

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 392 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYNAP 565
           +  + D E P  L    A  ++ + +    +DV   ++  L+PA+E K+ A P  N P
Sbjct: 9   LKSMPDKEAPAVL----AGLVQNILDEDIPEDVEHKLLMPLVPARERKQRAHPNVNKP 62


>SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 392 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 550
           +  + D E P  L    A  ++ + +    DDV+  ++K L+P KEG E+  P
Sbjct: 9   LDSMRDKEAPAVL----AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDP 57


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 410 GEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVK 508
           G    + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
          Length = 273

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 302 ERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASK-IRKLFNLKK 478
           + K KSV+   VD + S   L   R  AQE   L DG   ++L    A K + K   L+K
Sbjct: 191 DNKNKSVKATTVDKSASENKLKRKRNSAQE--NLDDGVKRKKLKDAGAMKSLVKELELEK 248

Query: 479 EDDVRRYVVKRLLPAKEGKE 538
             + R  +V+     K+ KE
Sbjct: 249 LVEQRSELVQEKQKKKKEKE 268


>SB_48293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 386 QEIP-GLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 550
           QEIP  + D E P  L    A  ++ + +    DDV+  ++K L+P K   E A P
Sbjct: 105 QEIPDSMPDKEAPAVL----AGLVQSILDEDIPDDVKHKLLKPLVPVKVWTEEADP 156


>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
          Length = 1282

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +2

Query: 407  DGEVPRRLGPKRAS-------KIRKLFNLKKEDDVRRYVVKRLLPAKEGKENA 544
            D ++PRR+  +R +       K RK+F+L     +   + KRLLP   G+  A
Sbjct: 1206 DKDIPRRIKQERQNNRYTDHRKFRKVFSLPSRLKIPANLAKRLLPPPPGRNVA 1258


>SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)
          Length = 748

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 443 ASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKP 550
           A  ++ + +    DDV+  ++K L+P KEG E+  P
Sbjct: 22  AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDP 57


>SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)
          Length = 256

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 455 RKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPR 553
           RK   L+KE++ RR   K    AKE + + KPR
Sbjct: 202 RKEEQLRKEEEARRQQEKERREAKENELSPKPR 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,786,470
Number of Sequences: 59808
Number of extensions: 406156
Number of successful extensions: 1110
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)