Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H09
         (586 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    25   2.4  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   3.2  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   4.2  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   7.3  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 158 RLEDLHQLQRPYAFHRRYGACAHPPLQ 78
           R+E + +L    AF R +GA + PP +
Sbjct: 846 RIESIQRLFTRVAFRRLFGAASLPPYE 872


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 456 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPR 322
           RI+DA          P +  G + APLR++   + +++A++M PR
Sbjct: 394 RIVDALFPVHPPVEWPDLGVG-NMAPLRSIGLTELDQIAASMHPR 437


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 122  RMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
            R   E  A L+   WK Y  R  GG D  G
Sbjct: 1988 RQREEYCARLIQHAWKRYKQRHGGGTDASG 2017


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 381 PLRTMTRAKTERLASTMQPR 322
           PLR +T  + + +AS MQPR
Sbjct: 413 PLREVTDLELQIIASGMQPR 432


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,442
Number of Sequences: 2352
Number of extensions: 12582
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55927431
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)