Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H09
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   259   1e-69
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  259 bits (634), Expect = 1e-69
 Identities = 125/185 (67%), Positives = 146/185 (78%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 391
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 392 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYNAPKI 571
           I GLTD  +PR+LGPKRASKIRKLFNL K DDV +YV+       +G      +  APKI
Sbjct: 121 IEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKI 176

Query: 572 QRLVT 586
           QRL+T
Sbjct: 177 QRLIT 181


>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
           protein D1044.2c protein.
          Length = 1090

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +1

Query: 370 CPQRCTGNSWTDXXXXXXXXXXQACV*NPQIIQFKKRRRCASLCCKTPFTCQRGQGKCKT 549
           C Q C+   W              C  +P  I    +R CA+  C     CQ  Q KC T
Sbjct: 316 CDQECSNGEWGPDCAYCCHCSEGTC--HP--ISGDCQRGCAT--CWDGVACQTRQEKCAT 369

Query: 550 QIQCA*NPEASN 585
           + QCA N  + N
Sbjct: 370 KTQCASNALSFN 381


>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
           protein D1044.2a protein.
          Length = 1051

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +1

Query: 370 CPQRCTGNSWTDXXXXXXXXXXQACV*NPQIIQFKKRRRCASLCCKTPFTCQRGQGKCKT 549
           C Q C+   W              C  +P  I    +R CA+  C     CQ  Q KC T
Sbjct: 316 CDQECSNGEWGPDCAYCCHCSEGTC--HP--ISGDCQRGCAT--CWDGVACQTRQEKCAT 369

Query: 550 QIQCA*NPEASN 585
           + QCA N  + N
Sbjct: 370 KTQCASNALSFN 381


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -2

Query: 432 PRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL*QEWPFDIKR 253
           P    T+P+ +P  +  P  T T AKT + ++T   +T     +P+      + PFD  +
Sbjct: 269 PTTTTTTPTTTPTTTTTPTTTTTTAKTTK-STTTTTKTTKTTSTPTTTTTTPKTPFDTSK 327

Query: 252 RT 247
            T
Sbjct: 328 CT 329


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 479 EDDVRRYVVKRLLPAKEGKENAKPRYNAPKIQRL 580
           +DD RRY  K L    +   N KPRY   K   +
Sbjct: 276 DDDGRRYFCKLLKQIAQKTANPKPRYKLSKCSHI 309


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 173 NLSIRRLEDLHQLQRPYAFHRRY 105
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 173 NLSIRRLEDLHQLQRPYAFHRRY 105
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK6.2 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 249 TRLLVRTPCFIGKPCLSLPPATRR 178
           TR +    CF+G+ C   PP TR+
Sbjct: 37  TRTMPIKKCFLGENCFERPPFTRK 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,509,544
Number of Sequences: 27780
Number of extensions: 283627
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)