BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_H09 (586 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 237 3e-63 At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 234 4e-62 At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 33 0.14 At1g63450.1 68414.m07175 exostosin family protein contains Pfam ... 29 1.7 At2g43030.1 68415.m05340 ribosomal protein L3 family protein con... 29 2.3 At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi... 29 3.0 At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 28 4.0 At4g24170.1 68417.m03468 kinesin motor family protein contains P... 28 5.3 At5g41250.1 68418.m05013 exostosin family protein contains Pfam ... 27 7.0 At5g07820.1 68418.m00896 expressed protein 27 7.0 At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 27 7.0 At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH... 27 9.2 At2g43795.1 68415.m05444 hypothetical protein 27 9.2 At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 27 9.2 >At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal protein S6, Arabidopsis thaliana, PID:g2662469 Length = 250 Score = 237 bits (581), Expect = 3e-63 Identities = 122/189 (64%), Positives = 142/189 (75%), Gaps = 4/189 (2%) Frame = +2 Query: 32 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211 MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60 Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 385 FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120 Query: 386 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYN 559 ++PGLTD E PR GPKRASKIRKLFNLKKEDDVR YV +R K+GKE +K Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSK---- 176 Query: 560 APKIQRLVT 586 APKIQRLVT Sbjct: 177 APKIQRLVT 185 >At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) Length = 249 Score = 234 bits (572), Expect = 4e-62 Identities = 119/189 (62%), Positives = 142/189 (75%), Gaps = 4/189 (2%) Frame = +2 Query: 32 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211 MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60 Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 385 FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120 Query: 386 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYN 559 ++PGLTD E PR GPKRASKIRKLFNL KEDDVR+YV +R K+GK+ +K Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSK---- 176 Query: 560 APKIQRLVT 586 APKIQRLVT Sbjct: 177 APKIQRLVT 185 >At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178: Krr1 family Length = 638 Score = 33.1 bits (72), Expect = 0.14 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = +2 Query: 401 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRL--LPAKEGKENAK 547 + +G V ++ ++A + K +KKEDDVR+ +KRL + KE KE K Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338 >At1g63450.1 68414.m07175 exostosin family protein contains Pfam profile: PF03016 exostosin family Length = 641 Score = 29.5 bits (63), Expect = 1.7 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Frame = +2 Query: 437 KRASKIRKLFN--LKKEDDVRRYVVKRLLPA-KEGKENAK 547 KR + I KL + L++ +D+R Y+V LLP G NAK Sbjct: 579 KRVNVIEKLMSKTLREREDMRSYIVHELLPGLVYGDSNAK 618 >At2g43030.1 68415.m05340 ribosomal protein L3 family protein contains Pfam profile PF00297: ribosomal protein L3 Length = 271 Score = 29.1 bits (62), Expect = 2.3 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Frame = +2 Query: 299 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKRASKIRKLFNL 472 G ++ RG + + S AL + GA PG ++P R+G R +KIRKL + Sbjct: 177 GIKRHHFKRGQMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTR-TKIRKLKIV 233 Query: 473 KKEDDVRRYVVKRLLPAKEG 532 K + ++ ++K LP K G Sbjct: 234 KVDKELNVVMIKGALPGKPG 253 >At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain Length = 1155 Score = 28.7 bits (61), Expect = 3.0 Identities = 21/94 (22%), Positives = 43/94 (45%) Frame = +2 Query: 71 KLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV 250 K E +++R+ +R AE+ +LLG + K LR G D+ + Q + +++ Sbjct: 595 KTAEAQGAYEVRVTKPRRTKAEIQRELLGLKRKALTLRRQGNVDEAEEVLNQTQILEAQI 654 Query: 251 RLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLS 352 + + G + Y D ++ +K D+ L+ Sbjct: 655 -MEIDSGKNLY---ADSDQPKKRSNDLATDSRLN 684 >At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase domain-containing protein low similarity to RAD54 [Drosophila melanogaster] GI:1765914; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 888 Score = 28.3 bits (60), Expect = 4.0 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +2 Query: 389 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKE 481 E+PGL D V L PK+ ++++KL K++ Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKLRREKRK 650 >At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam domain, PF00225: Kinesin motor domain Length = 1004 Score = 27.9 bits (59), Expect = 5.3 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = +2 Query: 146 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 313 DL G E L AG K+G + + +LT V +SKG + + P RD + R Sbjct: 231 DLAGSERASQTLS-AGSRLKEGCHINRSLLTLGTVIRKLSKGKNGHIPYRDSKLTR 285 >At5g41250.1 68418.m05013 exostosin family protein contains Pfam profile: PF03016 exostosin family Length = 561 Score = 27.5 bits (58), Expect = 7.0 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +2 Query: 449 KIRKLFNLKKEDDVRRYVVKRLLPA-KEGKENAK 547 +I K LK++ D++ Y+V++LLP G NAK Sbjct: 504 EILKAKTLKEKKDMKSYIVQQLLPGLVYGDSNAK 537 >At5g07820.1 68418.m00896 expressed protein Length = 561 Score = 27.5 bits (58), Expect = 7.0 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = -2 Query: 423 RGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDL 313 + TSPSVSP + + K R++ P+ DL Sbjct: 161 KSTSPSVSPVVRTVKKTNLVVNKASRISQNKSPKEDL 197 >At1g21740.1 68414.m02721 expressed protein contains Pfam domains, PF04782: Protein of unknown function (DUF632) and PF04783: Protein of unknown function (DUF630) Length = 953 Score = 27.5 bits (58), Expect = 7.0 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +2 Query: 68 QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 163 +KL+ EV DE KLR+ YE++ D LG E Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634 >At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CHX20) monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563 Length = 842 Score = 27.1 bits (57), Expect = 9.2 Identities = 20/58 (34%), Positives = 26/58 (44%) Frame = -3 Query: 197 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LR 24 Y+ G H R+L+DL Q R AC H P ++S I L R+T LR Sbjct: 434 YKPARGTH----RKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILR 487 >At2g43795.1 68415.m05444 hypothetical protein Length = 170 Score = 27.1 bits (57), Expect = 9.2 Identities = 21/60 (35%), Positives = 29/60 (48%) Frame = +2 Query: 281 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 460 YR + D ER K +G +++S RKG +E + E+PR KR S IRK Sbjct: 54 YRAQLDAERAMKLSKGRNYSSDIS-------RKGRRESSQIESAEIPRGRKAKRES-IRK 105 >At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / glyoxalase I, putative similar to putative lactoylglutathione lyase SP:Q39366, GI:2494843 from [Brassica oleracea] Length = 350 Score = 27.1 bits (57), Expect = 9.2 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = +2 Query: 53 PATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPM 220 P CQ + V D + FYEK G E+ E+K Y + + G + FP+ Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,860,371 Number of Sequences: 28952 Number of extensions: 266677 Number of successful extensions: 684 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 665 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 680 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1151426952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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