Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H09
(586 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 237 3e-63
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 234 4e-62
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 33 0.14
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ... 29 1.7
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con... 29 2.3
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi... 29 3.0
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 28 4.0
At4g24170.1 68417.m03468 kinesin motor family protein contains P... 28 5.3
At5g41250.1 68418.m05013 exostosin family protein contains Pfam ... 27 7.0
At5g07820.1 68418.m00896 expressed protein 27 7.0
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 27 7.0
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH... 27 9.2
At2g43795.1 68415.m05444 hypothetical protein 27 9.2
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 27 9.2
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 237 bits (581), Expect = 3e-63
Identities = 122/189 (64%), Positives = 142/189 (75%), Gaps = 4/189 (2%)
Frame = +2
Query: 32 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60
Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 385
FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
Query: 386 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYN 559
++PGLTD E PR GPKRASKIRKLFNLKKEDDVR YV +R K+GKE +K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSK---- 176
Query: 560 APKIQRLVT 586
APKIQRLVT
Sbjct: 177 APKIQRLVT 185
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 234 bits (572), Expect = 4e-62
Identities = 119/189 (62%), Positives = 142/189 (75%), Gaps = 4/189 (2%)
Frame = +2
Query: 32 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 385
FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120
Query: 386 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYN 559
++PGLTD E PR GPKRASKIRKLFNL KEDDVR+YV +R K+GK+ +K
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSK---- 176
Query: 560 APKIQRLVT 586
APKIQRLVT
Sbjct: 177 APKIQRLVT 185
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 401 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRL--LPAKEGKENAK 547
+ +G V ++ ++A + K +KKEDDVR+ +KRL + KE KE K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338
>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 641
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 437 KRASKIRKLFN--LKKEDDVRRYVVKRLLPA-KEGKENAK 547
KR + I KL + L++ +D+R Y+V LLP G NAK
Sbjct: 579 KRVNVIEKLMSKTLREREDMRSYIVHELLPGLVYGDSNAK 618
>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
contains Pfam profile PF00297: ribosomal protein L3
Length = 271
Score = 29.1 bits (62), Expect = 2.3
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +2
Query: 299 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKRASKIRKLFNL 472
G ++ RG + + S AL + GA PG ++P R+G R +KIRKL +
Sbjct: 177 GIKRHHFKRGQMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTR-TKIRKLKIV 233
Query: 473 KKEDDVRRYVVKRLLPAKEG 532
K + ++ ++K LP K G
Sbjct: 234 KVDKELNVVMIKGALPGKPG 253
>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1155
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/94 (22%), Positives = 43/94 (45%)
Frame = +2
Query: 71 KLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV 250
K E +++R+ +R AE+ +LLG + K LR G D+ + Q + +++
Sbjct: 595 KTAEAQGAYEVRVTKPRRTKAEIQRELLGLKRKALTLRRQGNVDEAEEVLNQTQILEAQI 654
Query: 251 RLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLS 352
+ + G + Y D ++ +K D+ L+
Sbjct: 655 -MEIDSGKNLY---ADSDQPKKRSNDLATDSRLN 684
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 389 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKE 481
E+PGL D V L PK+ ++++KL K++
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKLRREKRK 650
>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1004
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 146 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 313
DL G E L AG K+G + + +LT V +SKG + + P RD + R
Sbjct: 231 DLAGSERASQTLS-AGSRLKEGCHINRSLLTLGTVIRKLSKGKNGHIPYRDSKLTR 285
>At5g41250.1 68418.m05013 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 561
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 449 KIRKLFNLKKEDDVRRYVVKRLLPA-KEGKENAK 547
+I K LK++ D++ Y+V++LLP G NAK
Sbjct: 504 EILKAKTLKEKKDMKSYIVQQLLPGLVYGDSNAK 537
>At5g07820.1 68418.m00896 expressed protein
Length = 561
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 423 RGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDL 313
+ TSPSVSP + + K R++ P+ DL
Sbjct: 161 KSTSPSVSPVVRTVKKTNLVVNKASRISQNKSPKEDL 197
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 68 QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 163
+KL+ EV DE KLR+ YE++ D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
(CHX20) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 842
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -3
Query: 197 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LR 24
Y+ G H R+L+DL Q R AC H P ++S I L R+T LR
Sbjct: 434 YKPARGTH----RKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILR 487
>At2g43795.1 68415.m05444 hypothetical protein
Length = 170
Score = 27.1 bits (57), Expect = 9.2
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +2
Query: 281 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 460
YR + D ER K +G +++S RKG +E + E+PR KR S IRK
Sbjct: 54 YRAQLDAERAMKLSKGRNYSSDIS-------RKGRRESSQIESAEIPRGRKAKRES-IRK 105
>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
glyoxalase I, putative similar to putative
lactoylglutathione lyase SP:Q39366, GI:2494843 from
[Brassica oleracea]
Length = 350
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 53 PATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPM 220
P CQ + V D + FYEK G E+ E+K Y + + G + FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,860,371
Number of Sequences: 28952
Number of extensions: 266677
Number of successful extensions: 684
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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