Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H07
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.3  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    27   1.7  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.3  
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    26   4.0  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   5.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   5.3  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   7.0  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    25   9.3  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   9.3  

>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 449 ALGSLYSFLQFLTSPIMGSLSDAYGRK 529
           A GSL +FL   ++   G++ D YGR+
Sbjct: 191 AFGSLAAFLGLFSTAYYGTMGDIYGRR 217


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +1

Query: 4   RGNRSLHLDHNFKIIA*LNGSV*KVRNTN*EKFVTI-NHNNDSPKRYQRKEKHISK**V* 180
           RG+R+LHL+ + K I   N +  + R  + +K + + +H            K I +  + 
Sbjct: 181 RGSRNLHLNESGKFIEEANQARRQARLEDLKKRIALHSHKAGIEDELDITSKSIGRDTIP 240

Query: 181 NTEW*R*TKREKNFKKFGEFQNYRINFYIFIIGSSCFH 294
           N EW       K++  +G+  N+ I+    II S+  H
Sbjct: 241 NIEWWD-LPFIKDYNDYGDENNWLIDGPQSIINSAIQH 277


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 345 RVKEILFMHHCLEQSKGFNS*QELQIVLPL 434
           R + I+F+++CL+  K F+  + L+I +P+
Sbjct: 626 RKRVIIFLNNCLKFYKAFSLTKRLEITMPI 655


>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 214 FLVWFIFTTLYFKLII*RYVFPFSDTVLV 128
           ++VW  F T+ F L+  +Y  PF+ TV +
Sbjct: 153 YMVWPFFQTVNFWLMPLQYQMPFACTVAI 181


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 217 FFLVWFIFTTLYFKLII*RYVFPFSDTVLVNHCYDL*LQIFLSLCFA 77
           FFL WF    LY       Y F F D  L++H   L  Q+F+ +  A
Sbjct: 36  FFLTWFGGMFLYLTFASLSYQFVF-DKSLMDHPKFLKNQVFMEVLTA 81


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 365 YASLLRAVQGFQQLTGAPDRFASVLYGGALGSLYSFLQFLT-SPIMGSLSDAYG 523
           Y  ++  V+ F +    P+ +    Y   + S Y FLQF+T SP+ G+++ + G
Sbjct: 359 YGLMMNLVRDFSKNLENPNFYYEREY---VDSFYDFLQFMTSSPLGGNMACSAG 409


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 149 RKNISLND--KFEIQSGEDEPNEKKTLKNSE 235
           +KN  +N+  +F +  GE+  NE  TLK  E
Sbjct: 656 KKNSKVNENLRFSLNDGENYSNETITLKKDE 686


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 374 LLRAVQGFQ--QLTGAPDRFASVLYGGALGSLYSFLQFLTSPIMGSLSDAYGRK 529
           L +A  GF   +L  APD +AS  YGG   S  S  +   +P     S A GR+
Sbjct: 110 LAKAGHGFTAAELLNAPDYYASSPYGGYSPSGASSARQTPAPSRSGASTA-GRR 162


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 170 DKFEIQSGEDEPNEKKTLKNSESSK 244
           D+  ++  E+E +EK   KN +SSK
Sbjct: 94  DEQSVEEEEEEDSEKPVRKNKKSSK 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,681
Number of Sequences: 5004
Number of extensions: 40722
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)