Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H07
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 34 0.062
11_01_0211 - 1660249-1660352,1660504-1660547,1660893-1660934,166... 31 0.76
11_01_0207 - 1620192-1620280,1620408-1620451,1620703-1620791,162... 27 7.1
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106... 27 7.1
02_05_0242 + 27121152-27121316,27121404-27121515,27121616-271217... 27 7.1
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272... 27 9.4
04_03_0653 - 18429736-18431379 27 9.4
04_01_0134 + 1458173-1458289,1458490-1458804,1459027-1459305 27 9.4
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 34.3 bits (75), Expect = 0.062
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 440 YGGALGSLYSFLQFLTSPIMGSLSDAYGRKP 532
Y G +G+ Y F + L+S I G ++D YGRKP
Sbjct: 137 YAGFVGASYMFGRALSSVIWGIVADKYGRKP 167
>11_01_0211 -
1660249-1660352,1660504-1660547,1660893-1660934,
1661010-1661098,1661181-1661225,1661501-1661545,
1661574-1661681,1661765-1661850,1662253-1662340,
1662884-1663084,1663491-1663566,1663652-1663701,
1663783-1663845,1663924-1663977,1664093-1664195,
1664328-1664430,1664516-1664576,1664872-1664912,
1666605-1666761
Length = 519
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 440 YGGALGSLYSFLQFLTSPIMGSLSDAYGRKP 532
Y G +G+ + F + LTS I G +D GRKP
Sbjct: 82 YAGFVGASFMFGRCLTSTIWGIAADRIGRKP 112
>11_01_0207 -
1620192-1620280,1620408-1620451,1620703-1620791,
1620870-1620914,1621441-1621548,1621638-1621723,
1622202-1622289,1622403-1622576,1623084-1623159,
1623256-1623305,1623392-1623454,1623689-1623791,
1623871-1623973,1624679-1624739,1624864-1624904,
1625076-1625154
Length = 432
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 437 LYGGALGSLYSFLQFLTSPIMGSLSDAYGRKP 532
LY G LG+ Y + S G ++D GRKP
Sbjct: 55 LYAGFLGASYMIGRCFASLFWGVVADRIGRKP 86
>06_03_1333 - 29410014-29410052,29410071-29410322,29410601-29410633,
29411035-29411045,29411420-29415325,29415437-29415920
Length = 1574
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 242 WNSPNFLKFFSRLVHLHHSVFQTYHLEICFSFL 144
WN PNFL +S HHS F + E+ S++
Sbjct: 1257 WNCPNFLSSYSS--SSHHSPFPSSLQELFLSYM 1287
>02_05_0242 +
27121152-27121316,27121404-27121515,27121616-27121728,
27122024-27122379,27122515-27122590,27122682-27122768,
27122885-27122965,27123060-27123092,27123335-27123388,
27123482-27123523,27123649-27123727,27123813-27123883,
27123958-27124047
Length = 452
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 410 GAPDRFASVLYGGALGSLYSFLQFLTSPIMGSLSDAYGRK 529
G + ++ G ++ + +PI+G+LSD YGRK
Sbjct: 39 GRDECSVAIYLSGFQSAITGMGALVVTPIVGNLSDKYGRK 78
>06_03_0434 +
20725996-20726026,20726300-20726947,20727168-20727230,
20727300-20727458,20727750-20728247,20729068-20729321,
20729448-20729829,20729938-20730204,20730530-20730789
Length = 853
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 152 KNISLNDKFE---IQSGEDEPNEKKTLKNSE 235
+++SL D FE ++SG + PNE + + N +
Sbjct: 198 RSVSLEDPFESAQLESGVESPNEPRIINNGD 228
>04_03_0653 - 18429736-18431379
Length = 547
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 337 QRRG*RKYSLCIIA*SSPRVSTANRSSRSFCLCFVWGR 450
+RR R ++ C+ A PRV+ A R +RS L F R
Sbjct: 114 ERRAIRGFADCVSAFMEPRVAVAPRRARSLRLEFFAAR 151
>04_01_0134 + 1458173-1458289,1458490-1458804,1459027-1459305
Length = 236
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 113 IITMIHQNGIRERKNISLNDKFEIQSGEDE 202
I+ I +N + E +N DKFE + EDE
Sbjct: 132 ILDCISENTLIEEENFQAKDKFETSTLEDE 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,693,224
Number of Sequences: 37544
Number of extensions: 226966
Number of successful extensions: 482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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