Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H07
         (532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10703| Best HMM Match : Homeobox (HMM E-Value=4.6e-08)              52   2e-07
SB_56759| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_23687| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_32251| Best HMM Match : MFS_1 (HMM E-Value=2.5e-19)                 29   1.8  
SB_3047| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33)                28   4.1  

>SB_10703| Best HMM Match : Homeobox (HMM E-Value=4.6e-08)
          Length = 531

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
 Frame = +2

Query: 194 EDEPNEKKTLKNSESSKTXXXXXXXXXXXXXXXTMILPLLPSLLDYYNREEGKGNTLYAS 373
           ++ P ++K ++  E ++                T+ILPLLPSLL+ Y R     ++LY  
Sbjct: 28  DENPADEKPVQRQEENRALFTIFASLVIDLLAFTVILPLLPSLLELYGRH--NDDSLYNF 85

Query: 374 LLRAVQGFQQLTGAPD--RFASVLYGG-ALGSL 463
           L+  V  F+ + G PD  RF +VL+G   +G L
Sbjct: 86  LMEQVNSFKAMMGMPDVGRFNAVLFGARVIGGL 118


>SB_56759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 455 GSLYSFLQFLTSPIMGSLSDAYGRK 529
           GS+Y  +QF ++P++G  SD  GRK
Sbjct: 23  GSVYGAIQFFSNPLVGKFSDVAGRK 47


>SB_23687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 113 IITMIHQNGIRERKNISLNDKFEIQSGEDEPNEKKTLKNSESSKT 247
           I+T+  +  I+  + IS  D   +++ EDE  E+K L N ESS T
Sbjct: 155 IVTITPEEDIKISR-ISNGDDQTVETREDENEERKWLTNGESSST 198


>SB_32251| Best HMM Match : MFS_1 (HMM E-Value=2.5e-19)
          Length = 509

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 437 LYGGALGSLYSFLQFLTSPIMGSLSDAYGRK 529
           LYG   GS Y+  Q   SP++G +SDA G K
Sbjct: 43  LYGFVFGS-YALSQAFMSPLLGYISDARGLK 72


>SB_3047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 113 IITMIHQNGIRERKNISLNDKFEIQSGEDEPNEKKTLKNSESSKT 247
           I+T+  +  I+  + I+  D   +++ EDE  E+K L N ESS T
Sbjct: 236 IVTITPEEDIKLSR-IANGDDQTVETREDENEERKWLTNEESSST 279


>SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33)
          Length = 689

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -3

Query: 530 VSCRKHLKDFPL*GLLKIVGNYK 462
           +S +K+LKDF L  +LK+ GN++
Sbjct: 121 ISLQKYLKDFKLDKVLKLAGNFE 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,239
Number of Sequences: 59808
Number of extensions: 284187
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)