Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H07
(532 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40945-2|AAA81720.1| 445|Caenorhabditis elegans Hypothetical pr... 83 9e-17
AF077539-1|AAK84580.2| 550|Caenorhabditis elegans Hypothetical ... 32 0.29
AC024881-5|AAK71415.1| 668|Caenorhabditis elegans Na/ca exchang... 30 1.2
AF016445-2|AAC69064.1| 376|Caenorhabditis elegans Serpentine re... 28 4.8
Z69787-2|CAA93635.2| 474|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 27 8.4
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 27 8.4
>U40945-2|AAA81720.1| 445|Caenorhabditis elegans Hypothetical
protein F10D7.2 protein.
Length = 445
Score = 83.4 bits (197), Expect = 9e-17
Identities = 40/81 (49%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
Frame = +2
Query: 293 TMILPLLPSLLDYYNREEGKGNTLYASLLRAVQGFQQLTGAP--DRFASVLYGGALGSLY 466
T ILPL P++L+YY++E G + LY ++ +Q FQ+ G P +R+ V +GG LGSL+
Sbjct: 28 TSILPLFPTILNYYSKE-GHRDWLYDISVKGLQSFQEAIGVPHSERYDKVFFGGFLGSLF 86
Query: 467 SFLQFLTSPIMGSLSDAYGRK 529
S LQF++SP +GSLSD YGR+
Sbjct: 87 SALQFISSPTLGSLSDIYGRR 107
>AF077539-1|AAK84580.2| 550|Caenorhabditis elegans Hypothetical
protein T25D3.4 protein.
Length = 550
Score = 31.9 bits (69), Expect = 0.29
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 437 LYGGALGSLYSFLQFLTSPIMGSLSDAYGRK 529
L G + + L FL++P++G+LSD +GRK
Sbjct: 110 LMNGLVLGVKGLLSFLSAPLVGALSDVWGRK 140
>AC024881-5|AAK71415.1| 668|Caenorhabditis elegans Na/ca exchangers
protein 10 protein.
Length = 668
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 250 DSFGTLRIF*SFFLVWFIFTTLYFKLII*RYVFPFSDTVLVNHCY 116
D F + F F V + T + KL I P+S +L+ HC+
Sbjct: 392 DEFYEMNYFSRFITVVAVIPTFFLKLTIPSNEMPWSKPILIIHCF 436
>AF016445-2|AAC69064.1| 376|Caenorhabditis elegans Serpentine
receptor, class w protein134 protein.
Length = 376
Score = 27.9 bits (59), Expect = 4.8
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Frame = -1
Query: 367 IKSISFTLFSVIVVKERR---QKRQDHSESKKIQ**RYKN*CDSFGTLRIF*SFF----- 212
I I F + +V++VKE R ++R++ + SKKI R + T+ + F
Sbjct: 232 IPCIIFPIITVLLVKELRKTDERRKNSTSSKKITDSRKTTKLVFYNTILFLIAEFPLGVS 291
Query: 211 --LVWFIFTTLYFKLII*RYVFPFSDTVLVNHCYDL*LQIFLS 89
+ WF +LI +F FS + +N C + + +S
Sbjct: 292 MAITWFFVDVPGLQLICNHCLFLFSMILTINTCSHFIISMLMS 334
>Z69787-2|CAA93635.2| 474|Caenorhabditis elegans Hypothetical
protein C44C10.3 protein.
Length = 474
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 458 SLYSFLQFLTSPIM-GSLSDAYGRKP 532
SL +L L ++ G+LSD YGRKP
Sbjct: 89 SLVQYLGVLVGTVLFGTLSDKYGRKP 114
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 27.1 bits (57), Expect = 8.4
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = +2
Query: 134 NGIRERKNISLNDKFEIQSGE----DEPNEKKTLKNSESSKTXXXXXXXXXXXXXXXTMI 301
NG E + ISLN KFE + E + E+K E KT +
Sbjct: 369 NGSNEEQMISLNSKFERNTAERKRIEAVFEEKVTVQGERLKTLEMANLDLTNELASMGSL 428
Query: 302 LPLLPSLLDYYNRE 343
L SLL+ N+E
Sbjct: 429 LDKERSLLEEKNKE 442
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 27.1 bits (57), Expect = 8.4
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = +2
Query: 134 NGIRERKNISLNDKFEIQSGE----DEPNEKKTLKNSESSKTXXXXXXXXXXXXXXXTMI 301
NG E + ISLN KFE + E + E+K E KT +
Sbjct: 371 NGSNEEQMISLNSKFERNTAERKRIEAVFEEKVTVQGERLKTLEMANLDLTNELASMGSL 430
Query: 302 LPLLPSLLDYYNRE 343
L SLL+ N+E
Sbjct: 431 LDKERSLLEEKNKE 444
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 27.1 bits (57), Expect = 8.4
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = +2
Query: 134 NGIRERKNISLNDKFEIQSGE----DEPNEKKTLKNSESSKTXXXXXXXXXXXXXXXTMI 301
NG E + ISLN KFE + E + E+K E KT +
Sbjct: 371 NGSNEEQMISLNSKFERNTAERKRIEAVFEEKVTVQGERLKTLEMANLDLTNELASMGSL 430
Query: 302 LPLLPSLLDYYNRE 343
L SLL+ N+E
Sbjct: 431 LDKERSLLEEKNKE 444
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,582,852
Number of Sequences: 27780
Number of extensions: 223938
Number of successful extensions: 599
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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