Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H07
         (532 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43790.3 68416.m04680 transporter-related low similarity to S...    33   0.12 
At3g43790.2 68416.m04679 transporter-related low similarity to S...    33   0.12 
At3g43790.1 68416.m04678 transporter-related low similarity to S...    33   0.12 
At5g13740.1 68418.m01599 sugar transporter family protein contai...    29   1.5  
At5g13750.1 68418.m01600 transporter-related                           27   6.0  
At5g48500.1 68418.m05997 expressed protein similar to unknown pr...    27   7.9  

>At3g43790.3 68416.m04680 transporter-related low similarity to
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 484

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 440 YGGALGSLYSFLQFLTSPIMGSLSDAYGRKP 532
           Y G +GS +   + LTS   G L+D YGRKP
Sbjct: 77  YAGFVGSSFMIGRALTSIFWGKLADRYGRKP 107


>At3g43790.2 68416.m04679 transporter-related low similarity to
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 484

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 440 YGGALGSLYSFLQFLTSPIMGSLSDAYGRKP 532
           Y G +GS +   + LTS   G L+D YGRKP
Sbjct: 77  YAGFVGSSFMIGRALTSIFWGKLADRYGRKP 107


>At3g43790.1 68416.m04678 transporter-related low similarity to
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 478

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 440 YGGALGSLYSFLQFLTSPIMGSLSDAYGRKP 532
           Y G +GS +   + LTS   G L+D YGRKP
Sbjct: 77  YAGFVGSSFMIGRALTSIFWGKLADRYGRKP 107


>At5g13740.1 68418.m01599 sugar transporter family protein contains
           Pfam profile PF00083: major facilitator superfamily
           protein
          Length = 486

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 440 YGGALGSLYSFLQFLTSPIMGSLSDAYGRKP 532
           Y G +G  +   + LTS   G ++D YGRKP
Sbjct: 79  YAGFVGCSFMLGRALTSVFWGIVADRYGRKP 109


>At5g13750.1 68418.m01600 transporter-related
          Length = 478

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 440 YGGALGSLYSFLQFLTSPIMGSLSDAYGRKP 532
           Y G +G  +   +  TS   G ++D YGRKP
Sbjct: 78  YAGFVGCSFMLGRAFTSVAWGLVADRYGRKP 108


>At5g48500.1 68418.m05997 expressed protein similar to unknown
           protein (gb|AAD28645.1)
          Length = 167

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 441 YKTEAKRSGAPVSC*NP 391
           YKTEA+   APVSC  P
Sbjct: 101 YKTEAREFNAPVSCPTP 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,864,446
Number of Sequences: 28952
Number of extensions: 203177
Number of successful extensions: 439
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)