Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H06
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 144 1e-35
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 29 0.58
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 29 0.58
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 29 0.58
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 29 0.58
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 29 0.58
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 29 0.58
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 3.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.4
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 9.4
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 25 9.4
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 144 bits (348), Expect = 1e-35
Identities = 65/120 (54%), Positives = 87/120 (72%)
Frame = +1
Query: 34 AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDS 213
+FFQAL IPTKI++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V +YD
Sbjct: 134 SFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQ 193
Query: 214 GTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVT 393
G +F+P ILD+ EDL L+ + + A+SL YPT+ S HS+ N +KNL+A++ T
Sbjct: 194 GNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLAT 253
Score = 34.3 bits (75), Expect = 0.015
Identities = 19/61 (31%), Positives = 23/61 (37%)
Frame = +2
Query: 395 EVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLF 574
E F+ K ++ DPS FV ESD+DMGFGLF
Sbjct: 254 EYTFEGTEQTKAFLADPSAFVVAAAPAAAAGGEAEAPAAEAAAEEE--EESDEDMGFGLF 311
Query: 575 D 577
D
Sbjct: 312 D 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 542 ESDDDMGFGLFD 577
ESD+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 542 ESDDDMGFGLFD 577
ESD+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 542 ESDDDMGFGLFD 577
ESD+DMGFGLFD
Sbjct: 98 ESDEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 542 ESDDDMGFGLFD 577
ESD+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 542 ESDDDMGFGLFD 577
ESD+DMGFGLFD
Sbjct: 98 ESDEDMGFGLFD 109
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 542 ESDDDMGFGLFD 577
ESD+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 203 TCLTTRPYEKGEMFNMLRRVASEAP 129
+ LT PYEKGE N +R S P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 271 FLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIA 384
+L GV +A + PT S PH + GF + IA
Sbjct: 524 YLVGVPLQSATICVVSLPTEDSQPHVLHEGFLGEVCIA 561
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 207 VHLFDNKTIRKGRDVQHVEK 148
V L D +RKG DVQ +EK
Sbjct: 289 VLLSDTAGLRKGEDVQEIEK 308
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.0 bits (52), Expect = 9.4
Identities = 24/89 (26%), Positives = 33/89 (37%)
Frame = +2
Query: 164 TSLPFRMVLLSNRCTTPVPXXXXXXXXXXXXXXXXXXLLEWPTWPRSRCPSGTRRSRLRL 343
TS P M+ LS T+ P + + P S S TR + L L
Sbjct: 342 TSNPPPMLNLSKGSTSVEPTFCETNASVALSTVTSTPVFSTDSSPLS---SRTRENLLSL 398
Query: 344 IPSRTVSRTCSPSLPSHEVDFKEATTIKE 430
IPS S T + + SH+ F K+
Sbjct: 399 IPSAVSSPTKANTNKSHQRSFSIPKATKD 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,743
Number of Sequences: 5004
Number of extensions: 42126
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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