Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H06
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)         54   8e-08
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         29   4.3  
SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_8631| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_920| Best HMM Match : Extensin_2 (HMM E-Value=5.2)                  28   7.5  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = +1

Query: 19  GIRHEAFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 135
           G    +FFQAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 113 GPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 542 ESDDDMGFGLFD 577
           ESDDDMGFGLFD
Sbjct: 751 ESDDDMGFGLFD 762


>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 542 ESDDDMGFGLFD 577
           ESDDDMGFGLFD
Sbjct: 99  ESDDDMGFGLFD 110


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
 Frame = -1

Query: 281  PARNFSRRSSGLMSRIAGAKMVPESY-TCLTTRPYEKGEMFNMLRRVASEAPTLSP-GFR 108
            P+ N    S  L     GA   P  + T  T+ PY            AS +PT+SP G  
Sbjct: 1193 PSTNNDPVSQPLFITTPGALFTPLPHETSATSPPYTSASPVPTTTPSASSSPTISPIGSS 1252

Query: 107  IWTSLIISIVPFEIL--VGMERAWKKASCR-IPAAPG 6
            +     +  +    L  +G ERA ++A+   +P+ PG
Sbjct: 1253 LAQCSTVDSMDKPSLRPIGTERACRRATASPLPSMPG 1289


>SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 311 PSGTRRSRLRLIP-SRTVSRTCSPSLPS 391
           PS T   R RL P SR+ SRT +PS PS
Sbjct: 178 PSRTSTPRSRLTPRSRSRSRTITPSTPS 205


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 55   IPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLVVKQVYDSGTIFAP 231
            + T++S G+   +  V  +KP  + G  + T ++  N+S  S     VK ++ S T+  P
Sbjct: 2282 VETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEKVKSLFMSSTLDTP 2341

Query: 232  AILDI 246
            + L I
Sbjct: 2342 SSLSI 2346


>SB_8631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 249 LDVENCRREDGTGVVHLFDNKTIRKGRDVQHVEKSSFR 136
           L+VE  +RE    +   FD   + + R ++HVE+S  R
Sbjct: 93  LNVEELQREILDDIKRAFDEGDVEELRSLKHVERSKLR 130


>SB_920| Best HMM Match : Extensin_2 (HMM E-Value=5.2)
          Length = 238

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +3

Query: 318 VPDGRVCASFHR--ERFQEPARHRCRH 392
           +P G+ C    R  ERF  P ++RC H
Sbjct: 69  IPKGKHCVKLPRCGERFYNPIKYRCAH 95


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 311  PSGTRRSRLRLIPSRTVSRTCSPSLPSHEVDFKEATTIKEYIKD 442
            P G + ++ +LI S        PS+PSH V  K   T KE+ KD
Sbjct: 4160 PPGEKGTQPKLISS--AGEPTIPSVPSHSVPSKSRNT-KEHAKD 4200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,247,136
Number of Sequences: 59808
Number of extensions: 359731
Number of successful extensions: 1140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)