Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H06
         (647 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   215   3e-56
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   215   3e-56
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   215   3e-56
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   215   3e-56
AE014134-1550|AAF52699.1|  674|Drosophila melanogaster CG9289-PA...    30   3.1  
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...    29   4.1  
S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...    29   4.1  
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...    29   4.1  
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...    29   4.1  
BT004497-1|AAO42661.1|  339|Drosophila melanogaster GH12873p pro...    29   5.4  
AY119525-1|AAM50179.1| 2019|Drosophila melanogaster GH15728p pro...    29   7.2  
AE014296-292|AAF47517.1| 2019|Drosophila melanogaster CG13917-PA...    29   7.2  
AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-P...    28   9.5  
AE013599-851|AAF58949.1|  680|Drosophila melanogaster CG13954-PA...    28   9.5  

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  215 bits (526), Expect = 3e-56
 Identities = 105/125 (84%), Positives = 113/125 (90%)
 Frame = +1

Query: 19  GIRHEAFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVK 198
           G    +FFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLLNMLNISPFSYGL+V 
Sbjct: 131 GPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVN 190

Query: 199 QVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLA 378
           QVYDSG+IF+P ILDIKPEDLR KF  GVAN+AA+ LS+GYPT+ASAPHSIANGFKNLLA
Sbjct: 191 QVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLA 250

Query: 379 IAAVT 393
           IAA T
Sbjct: 251 IAATT 255



 Score = 55.2 bits (127), Expect = 7e-08
 Identities = 31/62 (50%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 395 EVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXS-ESDDDMGFGL 571
           EV+FKEATTIKEYIKDPSKF                            S E DDDMGFGL
Sbjct: 256 EVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGL 315

Query: 572 FD 577
           FD
Sbjct: 316 FD 317


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  215 bits (526), Expect = 3e-56
 Identities = 105/125 (84%), Positives = 113/125 (90%)
 Frame = +1

Query: 19  GIRHEAFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVK 198
           G    +FFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLLNMLNISPFSYGL+V 
Sbjct: 131 GPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVN 190

Query: 199 QVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLA 378
           QVYDSG+IF+P ILDIKPEDLR KF  GVAN+AA+ LS+GYPT+ASAPHSIANGFKNLLA
Sbjct: 191 QVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLA 250

Query: 379 IAAVT 393
           IAA T
Sbjct: 251 IAATT 255



 Score = 55.2 bits (127), Expect = 7e-08
 Identities = 31/62 (50%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 395 EVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXS-ESDDDMGFGL 571
           EV+FKEATTIKEYIKDPSKF                            S E DDDMGFGL
Sbjct: 256 EVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGL 315

Query: 572 FD 577
           FD
Sbjct: 316 FD 317


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  215 bits (526), Expect = 3e-56
 Identities = 105/125 (84%), Positives = 113/125 (90%)
 Frame = +1

Query: 19  GIRHEAFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVK 198
           G    +FFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLLNMLNISPFSYGL+V 
Sbjct: 131 GPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVN 190

Query: 199 QVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLA 378
           QVYDSG+IF+P ILDIKPEDLR KF  GVAN+AA+ LS+GYPT+ASAPHSIANGFKNLLA
Sbjct: 191 QVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLA 250

Query: 379 IAAVT 393
           IAA T
Sbjct: 251 IAATT 255



 Score = 55.2 bits (127), Expect = 7e-08
 Identities = 31/62 (50%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 395 EVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXS-ESDDDMGFGL 571
           EV+FKEATTIKEYIKDPSKF                            S E DDDMGFGL
Sbjct: 256 EVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGL 315

Query: 572 FD 577
           FD
Sbjct: 316 FD 317


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  215 bits (526), Expect = 3e-56
 Identities = 105/125 (84%), Positives = 113/125 (90%)
 Frame = +1

Query: 19  GIRHEAFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVK 198
           G    +FFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLLNMLNISPFSYGL+V 
Sbjct: 131 GPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVN 190

Query: 199 QVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLA 378
           QVYDSG+IF+P ILDIKPEDLR KF  GVAN+AA+ LS+GYPT+ASAPHSIANGFKNLLA
Sbjct: 191 QVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLA 250

Query: 379 IAAVT 393
           IAA T
Sbjct: 251 IAATT 255



 Score = 55.2 bits (127), Expect = 7e-08
 Identities = 31/62 (50%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 395 EVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXS-ESDDDMGFGL 571
           EV+FKEATTIKEYIKDPSKF                            S E DDDMGFGL
Sbjct: 256 EVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGL 315

Query: 572 FD 577
           FD
Sbjct: 316 FD 317


>AE014134-1550|AAF52699.1|  674|Drosophila melanogaster CG9289-PA
           protein.
          Length = 674

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 142 ATLLNMLNISP-FSYGLVVKQVYDSGTIFAPAILDIKP 252
           A L+N+L +SP    GL  + +Y SGT  +PA +   P
Sbjct: 263 AALVNVLTLSPAVPAGLFHRVIYQSGTALSPAFITDAP 300


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 542 ESDDDMGFGLFD 577
           +SDDDMGFGLFD
Sbjct: 101 QSDDDMGFGLFD 112


>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 542 ESDDDMGFGLFD 577
           +SDDDMGFGLFD
Sbjct: 101 QSDDDMGFGLFD 112


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 542 ESDDDMGFGLFD 577
           +SDDDMGFGLFD
Sbjct: 101 QSDDDMGFGLFD 112


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 542 ESDDDMGFGLFD 577
           +SDDDMGFGLFD
Sbjct: 101 QSDDDMGFGLFD 112


>BT004497-1|AAO42661.1|  339|Drosophila melanogaster GH12873p
           protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 422 WWWLP*SRLHVTAAMASRFLKPFAME*GADATVGYPMDN 306
           WWW P     +++++  RF  P A+    D  +  PMD+
Sbjct: 298 WWWTPNWSATLSSSVRDRFRDPRALSRIVDLQLRRPMDH 336


>AY119525-1|AAM50179.1| 2019|Drosophila melanogaster GH15728p protein.
          Length = 2019

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -1

Query: 410  P*SRLHVTAAMASRFLKPFAME*GADATVGYPMDNESAATLATPARNFSRRSSGLMSR 237
            P   LH++++ +SR   P A        +G    N S  +LA+PAR     S G   R
Sbjct: 1669 PAKNLHISSSDSSRNSSPAARRVQNGTRLGNKSSNLSMDSLASPARRAKSSSRGPQER 1726


>AE014296-292|AAF47517.1| 2019|Drosophila melanogaster CG13917-PA
            protein.
          Length = 2019

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -1

Query: 410  P*SRLHVTAAMASRFLKPFAME*GADATVGYPMDNESAATLATPARNFSRRSSGLMSR 237
            P   LH++++ +SR   P A        +G    N S  +LA+PAR     S G   R
Sbjct: 1669 PAKNLHISSSDSSRNSSPAARRVQNGTRLGNKSSNLSMDSLASPARRAKSSSRGPQER 1726


>AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-PA,
           isoform A protein.
          Length = 1788

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 209 SYTCLTTRPYEKGEMFNMLRRVASEAPTLSPGFRIWTSLIISIVPF 72
           +Y+C T   Y    M + LR +  E P++ PG  + TSL  S   F
Sbjct: 824 AYSCDTEGYYTSFHMDSGLRTLKEEEPSVMPGTPLQTSLHTSSYSF 869


>AE013599-851|AAF58949.1|  680|Drosophila melanogaster CG13954-PA
           protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 332 RLRLIPSRTVSRTCSPSLPSHEV 400
           RLR++ ++++S  CSP  P H V
Sbjct: 320 RLRILEAKSISAQCSPIFPRHVV 342


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,888,367
Number of Sequences: 53049
Number of extensions: 521777
Number of successful extensions: 1387
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)