Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H06
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   180   8e-46
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    31   0.93 
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    31   0.93 
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    31   0.93 
AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    31   0.93 
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    29   3.8  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    28   5.0  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    28   5.0  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  180 bits (438), Expect = 8e-46
 Identities = 79/125 (63%), Positives = 106/125 (84%)
 Frame = +1

Query: 19  GIRHEAFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVK 198
           G    +FFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+
Sbjct: 131 GPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVR 190

Query: 199 QVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLA 378
           QVYD GT++ P +LD+  E+LR++FL+GV NVA++SL++ YPT+AS  HS+ANG +N+L 
Sbjct: 191 QVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLG 250

Query: 379 IAAVT 393
           +AAVT
Sbjct: 251 VAAVT 255



 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 26/61 (42%), Positives = 28/61 (45%)
 Frame = +2

Query: 395 EVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLF 574
           +V FKEA TIK +I DPSKF                             ESDDDMGFGLF
Sbjct: 256 DVSFKEAETIKAFIADPSKF----AAAAPAAAAAPAAAAPAAKKEEPKEESDDDMGFGLF 311

Query: 575 D 577
           D
Sbjct: 312 D 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 542 ESDDDMGFGLFD 577
           ESDDDMGFGLFD
Sbjct: 96  ESDDDMGFGLFD 107


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 542 ESDDDMGFGLFD 577
           ESDDDMGFGLFD
Sbjct: 100 ESDDDMGFGLFD 111


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 542 ESDDDMGFGLFD 577
           ESDDDMGFGLFD
Sbjct: 99  ESDDDMGFGLFD 110


>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 542 ESDDDMGFGLFD 577
           ESDDDMGFGLFD
Sbjct: 100 ESDDDMGFGLFD 111


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 225 EDGTGVVHLFDNKTIRKGRDVQ-HVEKSSFRSSHLITRLQDM 103
           ED  GVV +F+N+    GR V+ +   + +  SHL  R++++
Sbjct: 791 EDQKGVVQIFNNQCTSSGRKVKLNQNVADYCGSHLEARVEEI 832


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 225 EDGTGVVHLFDNKTIRKGRDVQ-HVEKSSFRSSHLITRLQDM 103
           ED  GVV +F+N+    GR V+ +   + +  SHL  R++++
Sbjct: 804 EDQKGVVQIFNNQCTSSGRKVKLNQNVADYCGSHLEARVEEI 845


>Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +1

Query: 130 GASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSL 309
           G S+ +L   L+     +G  V ++ D G++ A  + + +    R   LAG A     SL
Sbjct: 570 GRSDESLNRFLSRGMIVWGPEVTKILDEGSLLAATVKNPENSGFRTVVLAGAAKTGKTSL 629

Query: 310 S 312
           +
Sbjct: 630 A 630


>Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +1

Query: 130 GASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSL 309
           G S+ +L   L+     +G  V ++ D G++ A  + + +    R   LAG A     SL
Sbjct: 570 GRSDESLNRFLSRGMIVWGPEVTKILDEGSLLAATVKNPENSGFRTVVLAGAAKTGKTSL 629

Query: 310 S 312
           +
Sbjct: 630 A 630


>Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical
           protein H15N14.2b protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +1

Query: 130 GASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSL 309
           G S+ +L   L+     +G  V ++ D G++ A  + + +    R   LAG A     SL
Sbjct: 504 GRSDESLNRFLSRGMIVWGPEVTKILDEGSLLAATVKNPENSGFRTVVLAGAAKTGKTSL 563

Query: 310 S 312
           +
Sbjct: 564 A 564


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 620  VLMRPHVYYDAHVLSQRDQSPCRRHS 543
            V++ P  YY+  VL QR   PC  HS
Sbjct: 986  VVVLPAEYYEGTVLRQRAPQPCLSHS 1011


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 620  VLMRPHVYYDAHVLSQRDQSPCRRHS 543
            V++ P  YY+  VL QR   PC  HS
Sbjct: 986  VVVLPAEYYEGTVLRQRAPQPCLSHS 1011


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 620  VLMRPHVYYDAHVLSQRDQSPCRRHS 543
            V++ P  YY+  VL QR   PC  HS
Sbjct: 986  VVVLPAEYYEGTVLRQRAPQPCLSHS 1011


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 620  VLMRPHVYYDAHVLSQRDQSPCRRHS 543
            V++ P  YY+  VL QR   PC  HS
Sbjct: 986  VVVLPAEYYEGTVLRQRAPQPCLSHS 1011


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
           protein ZK593.5 protein.
          Length = 1326

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 311 DNESAATLATPARNFSRRSSGLMSRIAGAKMVPES 207
           D    + L  PA +  R+ S +MSR AG+K  P S
Sbjct: 72  DASKRSGLKAPAASAIRKDSSVMSRSAGSKASPGS 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,734,333
Number of Sequences: 27780
Number of extensions: 251305
Number of successful extensions: 793
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)