Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H06
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.16 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.36 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.48 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.48 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 303 LVVHRVPDGRVCASFHRERFQEPARHRC 386
           L +H +P+ +V   F  +R +E A  RC
Sbjct: 396 LTIHTIPEVKVTPRFQAKRLKEEANIRC 423


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 24  SARGFLPGSFHPH 62
           S  GFLP S+HPH
Sbjct: 307 STAGFLPPSYHPH 319


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 118 GDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAP 231
           G+  G S  +L     ISP + GLV + +  SGT+ AP
Sbjct: 251 GESAGGSSVSLHL---ISPVTRGLVRRGILQSGTLNAP 285


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 118 GDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAP 231
           G+  G S  +L     ISP + GLV + +  SGT+ AP
Sbjct: 251 GESAGGSSVSLHL---ISPVTRGLVRRGILQSGTLNAP 285


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 8   PVLQEFGTRLSSRLFPSPLRFQR 76
           PVL+ F TR     + +PL  QR
Sbjct: 451 PVLKNFPTRYIHEPWNAPLNVQR 473


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 92  IISIVPFEILVGMERAWKKASCRIPAAPGD 3
           +ISI P  +   M   W K + R+   P D
Sbjct: 188 VISISPDLVETDMTAQWLKENSRLALKPKD 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,753
Number of Sequences: 438
Number of extensions: 3317
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)