Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H06
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 158 3e-39
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 154 6e-38
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 154 6e-38
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 35 0.041
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain... 33 0.16
At5g59130.1 68418.m07411 subtilase family protein contains simil... 31 0.87
At3g19330.3 68416.m02453 polyadenylate-binding protein-related /... 30 1.2
At3g19330.2 68416.m02452 polyadenylate-binding protein-related /... 30 1.2
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 29 3.5
At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1) i... 28 4.7
At3g48290.1 68416.m05270 cytochrome P450, putative very strong s... 28 6.1
At5g42950.1 68418.m05236 GYF domain-containing protein contains ... 27 8.1
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 8.1
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 158 bits (384), Expect = 3e-39
Identities = 75/131 (57%), Positives = 98/131 (74%), Gaps = 2/131 (1%)
Frame = +1
Query: 7 PGAAGI--RHEAFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFS 180
PG G+ +FFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFS
Sbjct: 128 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFS 187
Query: 181 YGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANG 360
YGLVV+ VYD+G++F P +L++ +DL EKF AGV+ + ALSL+I YPTVA+APH N
Sbjct: 188 YGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNA 247
Query: 361 FKNLLAIAAVT 393
+KN+LA+A T
Sbjct: 248 YKNVLAVALAT 258
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +2
Query: 395 EVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLF 574
E F +A +KE++KDP+KF ESD DMGF LF
Sbjct: 259 EYSFPQAENVKEFLKDPTKF--AVAVAAPVSGESGGAVVAVAVEEEAAEESDGDMGFDLF 316
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 154 bits (373), Expect = 6e-38
Identities = 71/131 (54%), Positives = 97/131 (74%), Gaps = 2/131 (1%)
Frame = +1
Query: 7 PGAAGI--RHEAFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFS 180
PG G+ +FFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFS
Sbjct: 127 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFS 186
Query: 181 YGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANG 360
YGLVV+ VYD+G++F+P +LD+ + L EKF +G++ V +L+L++ YPT+A+APH N
Sbjct: 187 YGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINA 246
Query: 361 FKNLLAIAAVT 393
+KN LAIA T
Sbjct: 247 YKNALAIAVAT 257
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +2
Query: 404 FKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDD---DMGFGLF 574
F +A +KE++KDPSKFV ESD+ + GFGLF
Sbjct: 261 FPQAEKVKEFLKDPSKFVVAAAAVSADAGGGSAQAGAAAKVEEKKEESDEEDYEGGFGLF 320
Query: 575 D 577
D
Sbjct: 321 D 321
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 154 bits (373), Expect = 6e-38
Identities = 71/131 (54%), Positives = 97/131 (74%), Gaps = 2/131 (1%)
Frame = +1
Query: 7 PGAAGI--RHEAFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFS 180
PG G+ +FFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFS
Sbjct: 127 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFS 186
Query: 181 YGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANG 360
YGLVV+ VYD+G++F+P +LD+ + L EKF +G++ V +L+L++ YPT+A+APH N
Sbjct: 187 YGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINA 246
Query: 361 FKNLLAIAAVT 393
+KN LAIA T
Sbjct: 247 YKNALAIAVAT 257
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = +2
Query: 395 EVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLF 574
E F +A +KEY+KDPSKF E D FGLF
Sbjct: 258 EYTFPQAEKVKEYLKDPSKFAVASVAAVSADAGGGAPAAAKVEEKEESDEEDYGGDFGLF 317
Query: 575 D 577
D
Sbjct: 318 D 318
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 31 EAFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVVKQV 204
E + L +P +++KGT+E++ D + + G ++ A +L +L ++ F L+ +
Sbjct: 151 EPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCRWS 210
Query: 205 YDSGTIFAPAILDIKPEDLRE 267
++ + ++ EDL +
Sbjct: 211 PSDFELYREDLSELYREDLSD 231
>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
Pfam profile PF04434: SWIM zinc finger
Length = 750
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 291 VGHSSKELLAKV-LRLDVENCRREDGTGVVHLFDNKTIRKGRDVQHVEKSSFRS 133
+G SSK + ++L+ E R + GVVHL D+ T+ K HV K S
Sbjct: 131 LGGSSKRQKTDIHVKLERETDRNSESDGVVHLVDSSTLNKDSISGHVSKPCMSS 184
>At5g59130.1 68418.m07411 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo]
Length = 732
Score = 30.7 bits (66), Expect = 0.87
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 4 SPGAAGIRHEAFFQ--ALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPF 177
SP AA ++ E+ F A I + S+G I+ D ILKP E N L SPF
Sbjct: 442 SPEAAVLKSESIFYQTAPKILSFSSRGPNIIVAD--ILKPDITAPGLEILAANSLRASPF 499
Query: 178 SYGLVVKQVYDSGT 219
VK +SGT
Sbjct: 500 YDTAYVKYSVESGT 513
>At3g19330.3 68416.m02453 polyadenylate-binding protein-related /
PABP-related similar to At14a (GI:11994571 and
GI:11994573) [Arabidopsis thaliana]; similar to
Polyadenylate-binding protein 2 (Poly(A)-binding protein
2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
Length = 345
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +2
Query: 326 RSRLRLIPSRTVSRTCSPSLPSHEVDFKEATTI 424
RSR+RLI T CSP LP H KE T I
Sbjct: 215 RSRVRLIHHATAGPLCSPYLP-HSFKRKELTNI 246
>At3g19330.2 68416.m02452 polyadenylate-binding protein-related /
PABP-related similar to At14a (GI:11994571 and
GI:11994573) [Arabidopsis thaliana]; similar to
Polyadenylate-binding protein 2 (Poly(A)-binding protein
2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
Length = 349
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +2
Query: 326 RSRLRLIPSRTVSRTCSPSLPSHEVDFKEATTI 424
RSR+RLI T CSP LP H KE T I
Sbjct: 215 RSRVRLIHHATAGPLCSPYLP-HSFKRKELTNI 246
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -1
Query: 230 GAKMVPESYTCLTTRPYEKGEMFNMLRRVASEAPTLSPGFRIWTSLIISIVPFEILVGME 51
G+ PE+Y+ + PYE+ E + R +++ P +P + L+ + EI G E
Sbjct: 372 GSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAELVAATERMEINEGDE 428
>At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1)
identical to GB:AAD01191 GI:4101473 from [ Arabidopsis
thaliana]; Monovalent cation:proton antiporter family 2
(CPA2 family) member, PMID:11500563
Length = 618
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 255 GPSREVPCWSGQRGRALVVHRVPDGRVCAS 344
G S ++P + G G V+H++ GR CA+
Sbjct: 459 GRSLDLPVYFGDAGSKEVLHKIGAGRACAA 488
>At3g48290.1 68416.m05270 cytochrome P450, putative very strong
similarity to Cytochrome P450 71A24
(SP:Q9STK9)[Arabidopsis thaliana];
Length = 488
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 240 ENCRREDGTGVVHLFDNKTIRKGRDVQHVEKS 145
E R+ V+HLF NK +R RDV+ E S
Sbjct: 123 EYWRQMKSVCVLHLFSNKMVRSFRDVRQEEIS 154
>At5g42950.1 68418.m05236 GYF domain-containing protein contains Pfam
profile: PF02213 GYF domain
Length = 1714
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 308 NESAATLATPARNFSRRSSGLMS-RIAGAKMVPESYTCLTTRPYEKGEMFNMLRRVASEA 132
N++ A+ TP+ + + G + R+ + +++ + YE+ + + + SE
Sbjct: 966 NQTVASFETPSLHLQNQLFGNVDPRMVLPDQIDDTHKKESKSEYERTVSADYVNSLYSEK 1025
Query: 131 PTLSPGF 111
P LSPG+
Sbjct: 1026 PVLSPGY 1032
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 290 TWPRSRCPSGTRRSRLRLIPSRTVSRTCSPSLPS 391
T RSR PSG+R SR++SR+ SP PS
Sbjct: 137 TRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPS 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,268
Number of Sequences: 28952
Number of extensions: 241951
Number of successful extensions: 761
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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