Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_H05
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0924 - 22660615-22660623,22661035-22661193,22661664-226625... 31 0.61
08_02_0451 + 17297293-17297793,17297866-17298130,17298215-172984... 31 0.61
05_03_0317 - 12249228-12249275,12263876-12264518,12264954-122666... 29 1.9
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354... 29 2.5
12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910 28 4.3
08_01_0727 + 6567935-6568112,6568197-6568912,6569061-6569162,656... 28 4.3
12_02_1193 + 26891619-26892456,26892545-26893884 27 5.7
05_03_0206 - 10049244-10049360,10057973-10058367,10058456-100590... 27 5.7
11_02_0091 - 8233155-8233333,8233414-8233738 27 7.5
01_05_0208 - 19291953-19292552,19293027-19293134,19293231-192933... 27 7.5
04_03_0572 + 17310729-17310746,17312209-17312902,17312991-173134... 27 10.0
>08_02_0924 -
22660615-22660623,22661035-22661193,22661664-22662539,
22663009-22663119,22663528-22663556,22663690-22663762,
22664804-22665100,22665193-22665345,22665979-22666068,
22667520-22667809,22667860-22668349
Length = 858
Score = 30.7 bits (66), Expect = 0.61
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Frame = -2
Query: 159 PLSCYRTEGRGDQHK-----TCCQKQLHIEISECYI 67
PL C+ T GRGD + +CC+ +E+++CYI
Sbjct: 647 PLPCFLTVGRGDPYAAFSIFSCCE-LTQLELADCYI 681
>08_02_0451 +
17297293-17297793,17297866-17298130,17298215-17298410,
17298437-17298864,17298923-17299200,17299298-17299588
Length = 652
Score = 30.7 bits (66), Expect = 0.61
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 51 DTH*TEYSIRLSQYAAAFGNMFYAGHLDPRSCSSSKDND 167
D TE+S L++ AA N Y G L PR+ S D D
Sbjct: 272 DVSITEFSQLLTRLAAGRANRVYVGELPPRTKSFKADGD 310
>05_03_0317 -
12249228-12249275,12263876-12264518,12264954-12266682,
12283603-12283975,12284119-12284715
Length = 1129
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 39 RVCIDTH*TEYSIRLSQYAAAFGNMFYAGHLDPRSCSSSKDND 167
R+ D TEYS L++ AA N Y G L PR D D
Sbjct: 206 RMISDVSVTEYSQLLTRQAAGRANRVYDGDLPPRVKPFKADGD 248
>09_06_0187 +
21433842-21433887,21434504-21435246,21435437-21435484,
21435929-21436814,21436967-21437056,21437543-21438417
Length = 895
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 193 FISRMNPYSPELNYFLAYQYCR 258
FI R+ +SP++ YF +Y+Y R
Sbjct: 190 FIGRLPEWSPDVRYFTSYEYPR 211
>12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910
Length = 447
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 51 DTH*TEYSIRLSQYAAAFGNMFYAGHLDPRSCSSSKDND 167
D TE+S L++ AA N Y G L PR+ D+D
Sbjct: 125 DVSVTEFSQLLTRQAAGRVNRVYGGELPPRANPHRTDDD 163
>08_01_0727 +
6567935-6568112,6568197-6568912,6569061-6569162,
6569236-6569547,6569862-6570299
Length = 581
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 51 DTH*TEYSIRLSQYAAAFGNMFYAGHLDPRSCSSSKDND 167
D TE+S L++ AA N Y G L PR+ + D+D
Sbjct: 76 DVSVTEFSQLLTRQAAGRVNRVYDGELPPRANTHKVDDD 114
>12_02_1193 + 26891619-26892456,26892545-26893884
Length = 725
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 39 RVCIDTH*TEYSIRLSQYAAAFGNMFYAGHLDPRSCSSSKDND 167
R+ D EYS L++ AA N Y G L PR+ D++
Sbjct: 292 RMIGDVSVVEYSQLLTRQAAGRANWVYNGELPPRANPQKADDE 334
>05_03_0206 -
10049244-10049360,10057973-10058367,10058456-10059011,
10078853-10079032
Length = 415
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 39 RVCIDTH*TEYSIRLSQYAAAFGNMFYAGHLDPRSCSSSKDND 167
R+ D EYS L++ AA N Y G L PR+ + K ND
Sbjct: 258 RMIGDVSVVEYSQLLTRQAAGRANRVYNGELPPRA-NPQKAND 299
>11_02_0091 - 8233155-8233333,8233414-8233738
Length = 167
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 51 DTH*TEYSIRLSQYAAAFGNMFYAGHLDPRSCSSSKDND 167
D EYS L++ AA N Y G L PR+ D+D
Sbjct: 125 DVSVVEYSQLLTRQAADRANRVYNGELPPRANPHKVDDD 163
>01_05_0208 -
19291953-19292552,19293027-19293134,19293231-19293344,
19293464-19293573,19293720-19293808,19293942-19294138,
19294241-19294402,19294501-19294619,19294739-19294826,
19294911-19295016,19295157-19295245,19295351-19295503,
19295631-19295723,19295823-19295889,19296217-19296329,
19296453-19296548,19297963-19298139
Length = 826
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 277 ASFETKEKADSITTYLTNAGYNKYDFWTSGNNLG 378
A+FE D++ L G NK W +GNNLG
Sbjct: 628 ATFEAPSGEDAVVVDLL--GLNKGVAWVNGNNLG 659
>04_03_0572 +
17310729-17310746,17312209-17312902,17312991-17313400,
17325755-17326063
Length = 476
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 39 RVCIDTH*TEYSIRLSQYAAAFGNMFYAGHLDPRSCSSSKDND 167
R+ D EYS L++ A N Y G L PR+ D+D
Sbjct: 250 RMIGDVSVVEYSQLLTRQEAGRANRVYNGELPPRANPHKADDD 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,259,155
Number of Sequences: 37544
Number of extensions: 229895
Number of successful extensions: 564
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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