Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H05
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_44578| Best HMM Match : PAN (HMM E-Value=0.00021)                   27   5.9  
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       27   5.9  
SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  

>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 226 LNYFLAYQYCRSLGLQLA-SFETKEKADSITTYLTN 330
           L+YF+A+ YCR +   L    +T E + ++ + +TN
Sbjct: 591 LSYFVAFVYCRKINRSLTMGVDTAEMSGAVVSGITN 626


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 190  YFISRMNPYSPELNYFLAYQYCRSLGLQLASFETKEKADSI 312
            +FI+  NPY    +  +       LG  + S ETKEK   I
Sbjct: 2473 HFIAACNPYRKHTDQMIHKLESAGLGYHVTSQETKEKLGKI 2513


>SB_44578| Best HMM Match : PAN (HMM E-Value=0.00021)
          Length = 257

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 111 CCQKQLHIEISECYIQFNAYLY 46
           CC+++  +EI +CY  +NAY +
Sbjct: 110 CCEQKARVEIRQCY-GYNAYKF 130


>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 444  PSHVVKGSVERQSSTHPEIHVRTEIVPRCPEIILVI 337
            P+  ++ ++E  +  +PE+ V  E+V   PE + VI
Sbjct: 1969 PTDTLERTLEHLNEVYPEVDVEVEVVEESPEGLPVI 2004


>SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 105 QKQLHIEISECYIQFNAYLYTLGS 34
           QK L  EI  CY+  NAY  T+G+
Sbjct: 71  QKDLMSEIRHCYLVSNAYPSTIGA 94



 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 105 QKQLHIEISECYIQFNAYLYTLGS 34
           QK L  EI  CY+  NAY  T+G+
Sbjct: 116 QKDLMSEIRHCYLVSNAYPSTIGA 139



 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 105 QKQLHIEISECYIQFNAYLYTLGS 34
           QK L  EI  CY+  NAY  T+G+
Sbjct: 161 QKDLMSEIRHCYLVSNAYPSTIGA 184



 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 105 QKQLHIEISECYIQFNAYLYTLGS 34
           QK L  EI  CY+  NAY  T+G+
Sbjct: 206 QKDLMSEIRHCYLVSNAYPSTIGA 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,355,110
Number of Sequences: 59808
Number of extensions: 272224
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)