Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H05
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10440.1 68418.m01210 cyclin family protein similar to cyclin...    27   6.3  
At4g30320.1 68417.m04310 allergen V5/Tpx-1-related family protei...    27   8.4  
At3g61880.1 68416.m06950 cytochrome P450, putative similar to cy...    27   8.4  
At2g46660.1 68415.m05822 cytochrome P450, putative similar to cy...    27   8.4  
At1g33600.1 68414.m04159 leucine-rich repeat family protein cont...    27   8.4  

>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
           D2.1 protein [Nicotiana tabacum] GI:4160298; contains
           Pfam profile PF00134: Cyclin, N-terminal domain
          Length = 298

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +1

Query: 184 VQYFISRMNPYSPELNYFLAYQYCRSL-----GLQLASFETKEKADSITTYLTNAGYNKY 348
           V+YF+S++N Y  E +  L  +  + +     G+    F   E A ++   ++   ++K+
Sbjct: 177 VRYFLSKINGYDQEPHSRLVTRSLQVIASTTKGIDFLEFRASEIAAAVALSVSGEHFDKF 236

Query: 349 DFWTSGNNL 375
            F +S ++L
Sbjct: 237 SFSSSFSSL 245


>At4g30320.1 68417.m04310 allergen V5/Tpx-1-related family protein
           similar to SP|Q40374 Pathogenesis-related protein PR-1
           precursor {Medicago truncatula}; contains Pfam profile
           PF00188: SCP-like extracellular protein
          Length = 161

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +1

Query: 292 KEKADSITTYLTNAGYNKYDFWTSGNNLGTDM--YLWMSTGLPFNATFN 432
           + + D   T+ +N  Y +  FW SGN  G     Y W+S    +N   N
Sbjct: 62  QRRGDCALTH-SNGPYGENLFWGSGNRWGPSQAAYGWLSEARSYNYRSN 109


>At3g61880.1 68416.m06950 cytochrome P450, putative similar to
           cytochrome p450 SP:O48927 from [Arabidopsis thaliana]
          Length = 534

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 365 PDVQKSYLL*PAFVRYVVIESAFSLVSNDA 276
           PDV K  L  P F    V ESA+SL+ N A
Sbjct: 119 PDVAKEILNSPVFADRPVKESAYSLMFNRA 148


>At2g46660.1 68415.m05822 cytochrome P450, putative similar to
           cytochrome p450 (CYP78A9)(GI:17065344) {Arabidopsis
           thaliana}
          Length = 530

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 365 PDVQKSYLL*PAFVRYVVIESAFSLVSNDA 276
           PDV K  L  P F    V ESA+SL+ N A
Sbjct: 123 PDVAKEILNSPVFADRPVKESAYSLMFNRA 152


>At1g33600.1 68414.m04159 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to
           gi|9294355|dbj|BAB02252 [Arabidopsis thaliana]
          Length = 478

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 316 TYLTNAGYNKYDFWTSGNNLGTDM 387
           T+  N  +N Y+F  SGN L  DM
Sbjct: 385 TWFFNLAHNLYEFQASGNKLRFDM 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,754,758
Number of Sequences: 28952
Number of extensions: 182283
Number of successful extensions: 462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)