Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H04
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...   105   6e-24
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    50   3e-07
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   1.8  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   4.2  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    25   5.6  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   7.4  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   9.8  

>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score =  105 bits (251), Expect = 6e-24
 Identities = 48/82 (58%), Positives = 64/82 (78%)
 Frame = +3

Query: 9   YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETG 188
           YHS+FIG+AG KNKGRISR+LANKCSIASRID FS+  ++ FG+ LR+QVE+RL F++TG
Sbjct: 355 YHSSFIGKAGAKNKGRISRFLANKCSIASRIDNFSDAPTTAFGQVLRRQVEERLNFFDTG 414

Query: 189 DIPKKNIEVMKEAMDELQQAVD 254
             P +N   M EA ++   +V+
Sbjct: 415 VAPTRNSIAMAEAYEKALSSVN 436


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
 Frame = +3

Query: 9   YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFS--EVQSSVFGEKLRQQVEDRLKFYE 182
           YH++ +G+A  KNKG+I+R LA K +++ R+D  S  +  +   G + R +VE+RL+  E
Sbjct: 343 YHASLVGQANSKNKGKIARVLATKAALSLRVDALSDKDTTNGNIGLENRIRVENRLRSLE 402

Query: 183 TGDI 194
            G +
Sbjct: 403 GGKL 406


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 126 SVFGEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDELQQAVDE 257
           SV   K+RQ V+D L  +E  D+   N EV +       +AVDE
Sbjct: 750 SVSAHKIRQHVQDSLTSHEPVDLIMVNDEVAR-LYQNSTRAVDE 792


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 70  WLINALSHPGLTVSLKSNHQCSVKNSVSKWKI 165
           W  N  + P   + LK NHQ  V+N++S+  I
Sbjct: 359 WKFNISNDPAYEM-LKQNHQSKVRNTLSQLAI 389


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 84  SIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDELQQAVDEE 260
           S+  RID  S +QS      +++Q +D+L+  E  D   KNIE   + ++E  + + ++
Sbjct: 56  SVGHRIDILSAIQS------MKKQQKDKLQ-QENKDQELKNIEESYKKLEEKTEHLSDD 107


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 67  TWLINALSHPGLTVSLKSNHQCSVKNSVSK 156
           T  ++ + H G TV+L+   QCS+   V +
Sbjct: 325 TKTLDLIFHRGFTVNLRMRFQCSIMRYVGE 354


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 100 ILDAIEHLLARYLLIL-PLFFRPARP 26
           +LD ++HL+AR   +L  LF  P+RP
Sbjct: 284 VLDEMDHLIAREQQVLYTLFEWPSRP 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,631
Number of Sequences: 5004
Number of extensions: 25005
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)