Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_H04
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732...   125   2e-29
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948...   118   3e-27
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061...    48   5e-06
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987...    48   5e-06
01_02_0011 + 10146944-10147067,10147871-10148025,10148137-101483...    27   10.0 

>07_03_1578 +
           27872636-27872840,27872928-27873175,27873215-27873295,
           27873665-27873822,27874391-27874450,27874655-27874873,
           27875100-27875201,27875352-27875500,27875582-27875734,
           27875839-27876194
          Length = 576

 Score =  125 bits (302), Expect = 2e-29
 Identities = 54/84 (64%), Positives = 73/84 (86%)
 Frame = +3

Query: 9   YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETG 188
           +HS+FIGRA  +NKGRI+RYLANKCSIASRIDC+SE+ +SVFG+KLR+QVE+RL FY+ G
Sbjct: 373 FHSSFIGRASTRNKGRIARYLANKCSIASRIDCYSELNTSVFGQKLREQVEERLDFYDKG 432

Query: 189 DIPKKNIEVMKEAMDELQQAVDEE 260
             P+KN++VMK A++++  AV E+
Sbjct: 433 IAPRKNLDVMKAAINDMTNAVSED 456


>03_02_1010 -
           13194002-13194339,13194421-13194573,13194661-13194809,
           13194932-13195184,13195282-13195469,13195684-13195841,
           13196093-13196307,13196410-13196614
          Length = 552

 Score =  118 bits (284), Expect = 3e-27
 Identities = 51/77 (66%), Positives = 67/77 (87%)
 Frame = +3

Query: 9   YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYETG 188
           +HS+FIGRA  KNKGR++RYLANKCSIASRIDC+SE  ++VFG+KLR+QVE+RL FY+ G
Sbjct: 355 FHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSESATAVFGQKLREQVEERLDFYDKG 414

Query: 189 DIPKKNIEVMKEAMDEL 239
             P+KN++VMK A+D +
Sbjct: 415 VAPRKNLDVMKAAIDSM 431


>03_02_0999 -
           13105030-13105434,13105716-13105850,13105933-13106133,
           13106374-13106673,13106764-13106964,13107246-13107410,
           13107484-13107663,13108171-13108212,13108327-13108404
          Length = 568

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/58 (39%), Positives = 37/58 (63%)
 Frame = +3

Query: 9   YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYE 182
           YH++ IG+A  K+KG+ISR LA K ++A R D   + + +  G + R ++E RL+  E
Sbjct: 341 YHASLIGQAAPKHKGKISRSLAAKTALAIRYDALGDGEDNSIGLESRVKLETRLRVLE 398


>03_02_0998 -
           13097675-13098079,13098307-13098441,13098522-13098722,
           13099060-13099359,13099449-13099649,13099932-13100096,
           13100170-13100349,13100896-13100937,13101040-13101117
          Length = 568

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/58 (39%), Positives = 37/58 (63%)
 Frame = +3

Query: 9   YHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEVQSSVFGEKLRQQVEDRLKFYE 182
           YH++ IG+A  K+KG+ISR LA K ++A R D   + + +  G + R ++E RL+  E
Sbjct: 341 YHASLIGQAAPKHKGKISRSLAAKTALAIRYDALGDGEDNSIGLESRVKLETRLRVLE 398


>01_02_0011 +
           10146944-10147067,10147871-10148025,10148137-10148319,
           10149448-10149800,10150036-10150207
          Length = 328

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 52  GGLAGTWLINALSHPGLTVSLKSNHQCSVKNS 147
           GG  G+WL+  L H G  V         +KN+
Sbjct: 16  GGFIGSWLVKELLHRGYFVRGAMREPADIKNA 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,621,592
Number of Sequences: 37544
Number of extensions: 142752
Number of successful extensions: 366
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)